Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AL121917.1-203ENST00000605534 577 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 MIR6780A-201ENST00000615089 68 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AC114781.5-201ENST00000615297 108 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 MIR6071-201ENST00000616741 78 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 MIR6826-201ENST00000617808 98 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 MIR6732-201ENST00000619365 60 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AL031601.2-202ENST00000622650 282 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 MIR3651-201ENST00000630427 90 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AL359851.1-201ENST00000569460 4997 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 Y_RNA.209-201ENST00000364156 111 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 RNU1-52P-201ENST00000384190 164 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 SNORA17A-201ENST00000391185 133 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 SYF2P2-201ENST00000417620 583 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 CEACAMP9-201ENST00000442990 513 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 IFNA11P-201ENST00000446352 526 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AL031183.1-201ENST00000457667 207 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 NDUFA5P5-201ENST00000468361 342 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 RPL23AP70-201ENST00000483361 460 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 RPS15AP34-201ENST00000487776 387 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AC022493.1-201ENST00000492984 337 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 HMGN1P11-201ENST00000508668 303 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 MTATP6P1-201ENST00000514057 681 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 RN7SKP183-201ENST00000517169 324 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AP003467.2-201ENST00000520175 319 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 NDUFS5P6-201ENST00000529136 295 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AMZ2P1-203ENST00000565833 850 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AC090616.3-201ENST00000582184 217 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AC084036.1-201ENST00000609190 508 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 VN1R74P-201ENST00000613259 503 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AC245884.12-201ENST00000615364 59 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AC090506.2-201ENST00000624521 419 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 SNORA17.5-201ENST00000630429 132 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
LINC00643Q86TS7 AC109315.1-201ENST00000584143 1347 ntBASIC1.62□□□□□ -2.15
LINC00643Q86TS7 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 OR56A5-201ENST00000340110 738 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 RNU1-32P-201ENST00000363937 159 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 SET-203ENST00000372688 801 ntTSL 2 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AL162578.1-201ENST00000406202 378 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 RNA5SP231-201ENST00000410496 138 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AL356095.1-201ENST00000417217 199 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AL606495.1-201ENST00000422100 813 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 COTL1P1-201ENST00000422309 375 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AL353678.1-201ENST00000422735 741 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC006455.6-201ENST00000426192 893 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 ATP5JP1-201ENST00000431631 322 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC122718.1-201ENST00000439448 744 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 IPO7P1-201ENST00000442031 636 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AL355472.1-201ENST00000451795 575 ntTSL 5 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 CALM1P2-201ENST00000452941 448 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC021205.1-201ENST00000468797 348 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC011276.1-201ENST00000469688 323 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 RPL21P13-201ENST00000488305 481 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 GTF2IP9-201ENST00000502460 301 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC111000.3-201ENST00000508057 576 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC105914.1-201ENST00000511798 226 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 SNORA70.17-201ENST00000516449 133 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms