Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC090181.2-201ENST00000602975 672 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AC012531.5-201ENST00000611375 151 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AC120349.2-201ENST00000625002 298 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 OR5BR1P-201ENST00000524992 1330 ntBASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
PDLIM3Q53GG5 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 Z82217.1-201ENST00000625157 8149 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 SAGE4P-201ENST00000442271 3381 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC068254.2-201ENST00000623938 3577 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AL133383.2-201ENST00000622958 2336 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC067945.1-201ENST00000342609 618 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 RNA5SP317-201ENST00000410176 116 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 RNA5SP311-201ENST00000411290 116 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 CYCSP19-201ENST00000411715 316 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 EI24P1-201ENST00000416584 867 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC234781.2-201ENST00000426370 994 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AL035410.1-201ENST00000427409 427 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 YME1L1P1-201ENST00000429435 297 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC092427.1-201ENST00000439177 601 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AL109741.2-201ENST00000455561 343 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 MTCO3P2-201ENST00000457365 171 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 NCOR1P1-202ENST00000486162 291 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC106872.2-201ENST00000494303 480 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 RPS6P4-201ENST00000494693 758 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC025445.1-201ENST00000502728 300 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 RNA5SP154-201ENST00000516193 111 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 RNA5SP315-201ENST00000516340 116 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 RNA5SP312-201ENST00000517068 116 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 IGLVIV-53-201ENST00000520107 367 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 OR5AK1P-201ENST00000524837 922 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 MRPS36P5-201ENST00000551909 298 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 RPL21P12-201ENST00000559810 515 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC068722.2-201ENST00000618734 544 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC092650.2-201ENST00000619984 902 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC010608.2-201ENST00000624830 470 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AC103706.2-201ENST00000638080 240 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 CPHL1P-201ENST00000461341 3407 ntBASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.64□□□□□ -1.83
PDLIM3Q53GG5 AP000526.1-201ENST00000603308 1388 ntBASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 SPRR2C-201ENST00000290702 219 ntBASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 RNY3P9-201ENST00000384727 106 ntBASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 MIR491-201ENST00000384877 84 ntBASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 MIR449B-201ENST00000384995 97 ntBASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 AC016769.3-201ENST00000396562 315 ntBASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 ATP5F1P4-201ENST00000397288 746 ntBASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 AL022722.2-201ENST00000402519 180 ntBASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 TIMM9P2-201ENST00000419324 266 ntBASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.63□□□□□ -1.83
PDLIM3Q53GG5 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 8.4 ms