Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 RNA5SP333-201ENST00000363466 118 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 RNA5SP334-201ENST00000364825 118 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 SMIM11P1-201ENST00000369586 178 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 RNU1-74P-201ENST00000384108 171 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 RN7SKP286-201ENST00000410894 299 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 RNA5SP111-201ENST00000411386 101 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 RPL21P109-201ENST00000422213 475 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AC016027.5-201ENST00000427227 210 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 CYCSP12-201ENST00000437729 300 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AC008481.1-201ENST00000463278 396 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 RPL22P13-201ENST00000493291 347 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 PGAM1P13-201ENST00000507497 754 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 ATP5LP3-201ENST00000514223 304 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 RNA5SP434-201ENST00000516647 121 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AC092447.9-201ENST00000603395 144 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AL031176.1-201ENST00000604554 466 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AC107871.2-201ENST00000612894 502 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AL445647.2-201ENST00000615170 130 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 MIR6719-201ENST00000622428 87 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AC005618.1-201ENST00000606901 3148 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AC062029.1-202ENST00000606164 3651 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 TEK-202ENST00000406359 3935 ntTSL 2 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 CASC19-228ENST00000641414 1684 ntBASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.52□□□□□ -1.37
LIMD1Q9UGP4 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 Y_RNA.39-201ENST00000362620 98 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 Y_RNA.307-201ENST00000365022 117 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 ENSAP1-201ENST00000392855 326 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AL445189.1-201ENST00000405722 338 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 U3.43-201ENST00000410734 213 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 RN7SKP121-201ENST00000410842 305 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AL713922.1-201ENST00000416477 747 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AL035660.1-201ENST00000422041 222 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 HNRNPA1P18-201ENST00000433537 927 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 CEACAMP1-201ENST00000434624 1035 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 PPIAP10-201ENST00000438675 458 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 RPL10P17-201ENST00000453852 316 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 RN7SL193P-201ENST00000491708 276 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AC026979.1-201ENST00000492525 396 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AC096745.1-201ENST00000509945 370 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AC022616.4-201ENST00000522985 181 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 CR383656.7-201ENST00000548164 174 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AL109918.3-201ENST00000603072 338 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AC006254.3-201ENST00000603353 884 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AC006329.2-201ENST00000611491 394 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AP005431.1-201ENST00000618479 319 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AC110801.1-201ENST00000623590 212 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 AC027287.1-201ENST00000553115 1453 ntBASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC6.51□□□□□ -1.37
LIMD1Q9UGP4 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 136.6 ms