Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 NCOR1P1-202ENST00000486162 291 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC011352.3-201ENST00000505162 593 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC023141.12-201ENST00000512399 199 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 SNORA67.7-201ENST00000516664 135 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 IGKV2D-36-201ENST00000518643 226 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 HIGD1AP10-201ENST00000527837 282 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC092451.2-201ENST00000538746 658 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 MIR3158-1-201ENST00000583596 81 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC008759.3-201ENST00000613300 508 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC119674.1-207ENST00000641355 633 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 ZNF37BP-203ENST00000452306 1352 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VPS35Q96QK1 AL157700.1-201ENST00000561973 1432 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS35Q96QK1 AC005183.1-201ENST00000603687 1979 ntBASIC3.58□□□□□ -1.84
VPS35Q96QK1 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS35Q96QK1 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS35Q96QK1 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS35Q96QK1 SNORD9-201ENST00000362566 104 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 RNU5B-1-201ENST00000363286 116 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 RNU1-85P-201ENST00000364127 164 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 OR6K3-202ENST00000368146 996 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AL359837.1-201ENST00000381357 287 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 MIR184-201ENST00000384962 84 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AL355615.1-201ENST00000406187 641 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC244098.2-201ENST00000422068 99 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC006989.1-201ENST00000427212 131 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 SKP1P1-201ENST00000438081 489 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
VPS35Q96QK1 RPL12P26-201ENST00000452430 487 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC073387.1-201ENST00000453261 709 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 SNORA84-201ENST00000459229 133 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 TMED11P-201ENST00000479478 690 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC106707.2-201ENST00000484182 374 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AP002812.1-201ENST00000495378 474 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 NAMPTP2-201ENST00000505629 1115 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC091860.1-201ENST00000505723 432 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC118282.2-201ENST00000508739 374 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC005921.1-201ENST00000510589 286 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AP004242.1-201ENST00000533701 349 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC005412.1-201ENST00000580812 1049 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 SNORA51-201ENST00000606420 132 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AL355578.1-201ENST00000607405 1328 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC018926.1-201ENST00000616335 435 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC006133.1-201ENST00000617106 264 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AP003355.3-201ENST00000623465 114 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS35Q96QK1 AC009093.8-201ENST00000641769 292 ntBASIC3.57□□□□□ -1.84
VPS35Q96QK1 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
VPS35Q96QK1 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS35Q96QK1 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS35Q96QK1 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC007823.1-201ENST00000569932 1566 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS35Q96QK1 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS35Q96QK1 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS35Q96QK1 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS35Q96QK1 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS35Q96QK1 SNORA73.2-201ENST00000364946 201 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 GSTA8P-201ENST00000404253 637 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 U3.39-201ENST00000408569 239 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC092638.1-201ENST00000411966 1275 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 MTATP6P19-201ENST00000413797 659 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms