Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AC106785.1-201ENST00000565935 262 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 MIR1254-2-201ENST00000579553 63 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AC002487.1-201ENST00000604565 994 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AC103798.2-201ENST00000624292 632 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AL512506.2-201ENST00000624472 458 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 OR6C71P-202ENST00000641886 1107 ntBASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
ZNF540Q8NDQ6 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 RNU6-1074P-201ENST00000383995 104 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 SNORA48.8-201ENST00000391324 134 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 EI24P2-201ENST00000397776 1076 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 CYCSP45-201ENST00000402289 315 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AL391417.1-201ENST00000404100 426 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AL024474.1-201ENST00000404655 591 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AL354719.1-201ENST00000406535 843 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AL139098.1-201ENST00000407291 389 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 OR4C10P-201ENST00000434991 931 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC234064.1-201ENST00000436312 247 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 RPS4XP4-201ENST00000443195 763 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC044797.1-201ENST00000445744 679 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 RPS17P13-201ENST00000448974 407 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 NANOGP10-201ENST00000453325 895 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 RPL23AP31-201ENST00000456160 467 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 RNA5SP246-201ENST00000458909 119 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 RPL32P14-201ENST00000463196 378 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 PABPC1P3-201ENST00000469174 459 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 TRBV12-2-201ENST00000489763 344 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 RPL21P129-201ENST00000491732 478 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 NUP58P1-201ENST00000502546 1738 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC093767.1-201ENST00000504523 156 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC011352.3-201ENST00000505162 593 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 MTND4LP22-201ENST00000508209 276 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 ARL2BPP6-201ENST00000512757 439 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 MTND4LP31-201ENST00000514859 294 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 RNA5SP135-201ENST00000517019 125 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 ERHP1-201ENST00000523006 310 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC022690.1-201ENST00000526681 550 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AP000790.1-201ENST00000528891 737 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 OR4T1P-201ENST00000554933 911 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC093519.1-201ENST00000566109 298 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 MTCO1P40-201ENST00000574371 625 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 SNORD39.3-201ENST00000584451 71 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC092474.3-201ENST00000603022 568 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC009220.3-201ENST00000604318 586 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC073387.2-201ENST00000604797 784 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AL109618.2-201ENST00000605527 211 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC008962.1-201ENST00000605729 304 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC011816.2-201ENST00000607089 556 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AL391497.1-201ENST00000608671 547 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC099676.1-201ENST00000608886 657 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC090740.1-201ENST00000623193 2262 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 AC139713.2-210ENST00000641741 992 ntBASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.57□□□□□ -1.84
ZNF540Q8NDQ6 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.56□□□□□ -1.84
ZNF540Q8NDQ6 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms