Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC5□□□□□ -1.61
SMARCA1P28370 CYCSP2-201ENST00000558168 301 ntBASIC5□□□□□ -1.61
SMARCA1P28370 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC5□□□□□ -1.61
SMARCA1P28370 AC009509.4-201ENST00000619202 509 ntBASIC5□□□□□ -1.61
SMARCA1P28370 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC5□□□□□ -1.61
SMARCA1P28370 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5□□□□□ -1.61
SMARCA1P28370 MIR3653-201ENST00000625572 110 ntBASIC5□□□□□ -1.61
SMARCA1P28370 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5□□□□□ -1.61
SMARCA1P28370 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC5□□□□□ -1.61
SMARCA1P28370 LINC01355-201ENST00000566551 5444 ntBASIC5□□□□□ -1.61
SMARCA1P28370 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5□□□□□ -1.61
SMARCA1P28370 ZNF37BP-203ENST00000452306 1352 ntBASIC5□□□□□ -1.61
SMARCA1P28370 AL158163.1-201ENST00000603915 1649 ntBASIC5□□□□□ -1.61
SMARCA1P28370 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5□□□□□ -1.61
SMARCA1P28370 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
SMARCA1P28370 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC5□□□□□ -1.61
SMARCA1P28370 AL356489.2-201ENST00000566968 3528 ntBASIC5□□□□□ -1.61
SMARCA1P28370 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.99□□□□□ -1.61
SMARCA1P28370 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SMARCA1P28370 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SMARCA1P28370 RNA5SP28-201ENST00000363841 119 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SMARCA1P28370 RNU6-921P-201ENST00000384361 107 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 FABP12P1-201ENST00000401911 322 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.99□□□□□ -1.61
SMARCA1P28370 RNU2-21P-201ENST00000410368 188 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 MIR1911-201ENST00000410783 80 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AC073264.1-201ENST00000411508 416 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 COX6CP17-201ENST00000421389 185 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 SDCBPP2-201ENST00000424643 885 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.99□□□□□ -1.61
SMARCA1P28370 C4BPAP2-201ENST00000428434 478 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.99□□□□□ -1.61
SMARCA1P28370 RPS24P1-201ENST00000438550 371 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 MTND1P34-201ENST00000438556 671 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AL512286.1-201ENST00000439244 400 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 RPS20P21-201ENST00000466859 343 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC4.99□□□□□ -1.61
SMARCA1P28370 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SMARCA1P28370 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.99□□□□□ -1.61
SMARCA1P28370 CBX3P3-201ENST00000508108 532 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AC008958.1-201ENST00000511047 682 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AC079140.3-201ENST00000511111 550 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC4.99□□□□□ -1.61
SMARCA1P28370 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.99□□□□□ -1.61
SMARCA1P28370 AC239860.2-201ENST00000525886 270 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.99□□□□□ -1.61
SMARCA1P28370 AP002963.1-201ENST00000530590 184 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.99□□□□□ -1.61
SMARCA1P28370 AC006064.5-201ENST00000541782 248 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC4.99□□□□□ -1.61
SMARCA1P28370 AL161713.1-201ENST00000555538 145 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.99□□□□□ -1.61
SMARCA1P28370 SULT1C2P1-202ENST00000562418 459 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC4.99□□□□□ -1.61
SMARCA1P28370 AC136618.2-201ENST00000575091 400 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 MIR3611-201ENST00000584484 83 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AC067852.4-201ENST00000590314 478 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AL354984.3-201ENST00000604803 325 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AL356596.1-201ENST00000624230 379 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 AC231657.1-201ENST00000624313 397 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SMARCA1P28370 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SMARCA1P28370 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.99□□□□□ -1.61
SMARCA1P28370 AL133412.1-201ENST00000380194 2992 ntBASIC4.99□□□□□ -1.61
SMARCA1P28370 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.99□□□□□ -1.61
SMARCA1P28370 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.98□□□□□ -1.61
SMARCA1P28370 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.98□□□□□ -1.61
SMARCA1P28370 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.98□□□□□ -1.61
SMARCA1P28370 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SMARCA1P28370 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
SMARCA1P28370 RNU1-14P-201ENST00000362759 152 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.98□□□□□ -1.61
SMARCA1P28370 RNU6-441P-201ENST00000384545 106 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 SNORD66.1-201ENST00000391230 76 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 SNRPEP2-201ENST00000397592 279 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.98□□□□□ -1.61
SMARCA1P28370 RN7SKP235-201ENST00000410662 305 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.98□□□□□ -1.61
SMARCA1P28370 NUP35P2-201ENST00000416748 943 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 AC234779.1-201ENST00000425910 285 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 NPM1P34-201ENST00000428821 893 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 AC092427.1-201ENST00000439177 601 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC4.98□□□□□ -1.61
SMARCA1P28370 RPS26P56-201ENST00000444468 240 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 EEF1E1P1-201ENST00000446998 430 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 MTCO1P48-201ENST00000448024 1096 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 snoU13.7-201ENST00000459220 104 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 AC041039.1-201ENST00000485656 536 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.98□□□□□ -1.61
SMARCA1P28370 BNIP3P41-201ENST00000503774 571 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC4.98□□□□□ -1.61
SMARCA1P28370 RNA5SP49-201ENST00000516450 115 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.98□□□□□ -1.61
SMARCA1P28370 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.98□□□□□ -1.61
SMARCA1P28370 AP000873.5-201ENST00000533906 236 ntBASIC4.98□□□□□ -1.61
SMARCA1P28370 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC4.98□□□□□ -1.61
SMARCA1P28370 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.98□□□□□ -1.61
SMARCA1P28370 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 153.3 ms