Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SETP8-201ENST00000435341 628 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 HMGB1P45-201ENST00000435986 653 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 HMGN2P20-201ENST00000437531 273 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 AL662791.1-201ENST00000441992 928 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC42Q96M95 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC42Q96M95 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC42Q96M95 AC021146.7-201ENST00000509604 775 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC42Q96M95 OR8L1P-201ENST00000534005 955 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 OR6C73P-201ENST00000546432 358 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 AL157394.1-201ENST00000562983 1224 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 AC034105.3-201ENST00000565294 442 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC42Q96M95 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC42Q96M95 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC42Q96M95 AL392112.1-201ENST00000605115 829 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC42Q96M95 AL020991.1-201ENST00000612314 373 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 AL590410.1-201ENST00000617925 333 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 Z99129.2-201ENST00000619967 314 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 AL590240.3-201ENST00000621416 943 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC42Q96M95 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC42Q96M95 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 MIR22-201ENST00000362190 85 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 AL353692.2-201ENST00000407054 335 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 AL356806.1-201ENST00000422524 916 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 AL159987.2-201ENST00000432754 307 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 AC006028.1-201ENST00000438379 402 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 MED6P1-201ENST00000439659 713 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 TRIM60P18-201ENST00000441518 828 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 AL359073.1-201ENST00000448036 403 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 RPS29P2-201ENST00000479278 136 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 PRELID3BP6-201ENST00000503839 571 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC42Q96M95 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC42Q96M95 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 PCNAP1-202ENST00000595299 752 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 AL031985.2-201ENST00000600955 480 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 AC084035.1-201ENST00000634543 607 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 AC139713.2-210ENST00000641741 992 ntBASIC3.2□□□□□ -1.9
CCDC42Q96M95 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC42Q96M95 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC42Q96M95 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC42Q96M95 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC42Q96M95 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC42Q96M95 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC42Q96M95 SNORA26.7-201ENST00000391288 122 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC42Q96M95 HNRNPDP2-201ENST00000406475 478 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC241520.1-201ENST00000422654 1099 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 RPL37P1-201ENST00000432310 284 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC093392.2-201ENST00000450682 337 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 HMGB1P26-201ENST00000452520 628 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC104629.2-201ENST00000468627 598 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC42Q96M95 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC093755.1-201ENST00000512950 1023 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC108120.2-201ENST00000512973 294 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC010653.1-201ENST00000571108 881 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 MIR4474-201ENST00000579189 78 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 MIR3690-201ENST00000580266 75 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 OR2BH1P-201ENST00000608850 864 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC024341.1-201ENST00000526444 1552 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC42Q96M95 MTCO1P12-201ENST00000414273 1543 ntBASIC3.19□□□□□ -1.9
CCDC42Q96M95 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC42Q96M95 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms