Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 Y_RNA.384-201ENST00000383909 102 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 U8.14-201ENST00000390843 143 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 TXNP7-201ENST00000406296 293 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AC093655.2-201ENST00000425735 631 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 MTCO3P46-201ENST00000425787 232 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 MTND6P18-201ENST00000439477 513 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 CBWD4P-201ENST00000445695 655 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 ARL2BPP10-201ENST00000446487 531 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 PSMC1P13-201ENST00000458195 985 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 SNORD19B-201ENST00000459623 84 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AC091564.1-201ENST00000464563 479 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AC073522.1-201ENST00000483312 377 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 RPL36AP51-201ENST00000487216 318 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AC108693.1-201ENST00000496068 432 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 BX510359.5-201ENST00000515651 304 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AC018630.1-201ENST00000541376 925 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AL669831.4-202ENST00000590817 238 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AC008814.1-201ENST00000603797 406 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AL355472.4-201ENST00000610233 626 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 AC068831.8-201ENST00000620171 435 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC39Q9UFE4 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC39Q9UFE4 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.9□□□□□ -1.47
CCDC39Q9UFE4 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.9□□□□□ -1.47
CCDC39Q9UFE4 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
CCDC39Q9UFE4 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC108467.2-201ENST00000617640 1597 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AP001273.1-201ENST00000624493 3152 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 SCARNA15-201ENST00000607520 4325 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 RNU1-146P-201ENST00000364015 165 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 RNU1-74P-201ENST00000384108 171 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 RNU6-43P-201ENST00000384302 107 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 SNORA67-201ENST00000384423 137 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 MIR217-201ENST00000384817 110 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 RPL5P18-201ENST00000406671 891 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 OR3A2-201ENST00000408891 1076 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 RNU2-47P-201ENST00000410649 186 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC013404.1-201ENST00000413068 249 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 ISCA1P6-201ENST00000427740 390 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 Z82205.1-201ENST00000428456 297 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 DYNLL1P7-201ENST00000429273 258 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 NDUFA5P7-201ENST00000452914 242 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 SIAH1P1-201ENST00000479411 923 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 RPL7P6-201ENST00000480903 738 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 RNA5SP362-201ENST00000516048 118 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 RNU6-416P-201ENST00000516265 103 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AP002373.2-201ENST00000541631 1060 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 RPL21P5-201ENST00000554662 472 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AL845331.3-202ENST00000562856 261 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC115286.1-201ENST00000604298 434 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC103710.4-201ENST00000609301 899 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC087588.2-201ENST00000617667 426 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC068722.2-201ENST00000618734 544 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 MIR6837-201ENST00000620884 64 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 CYP4F35P-202ENST00000636121 390 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 AC119674.1-212ENST00000641155 993 ntBASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC39Q9UFE4 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms