Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL3A1P02461 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.91□□□□□ -1.62
COL3A1P02461 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL3A1P02461 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.91□□□□□ -1.62
COL3A1P02461 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC4.91□□□□□ -1.62
COL3A1P02461 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL3A1P02461 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL3A1P02461 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL3A1P02461 RNA5SP119-201ENST00000362715 117 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 Y_RNA.88-201ENST00000363029 99 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 RNU6-553P-201ENST00000364047 96 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 RNU6-1283P-201ENST00000365314 105 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 Y_RNA.578-201ENST00000390903 88 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 NPM1P38-201ENST00000403835 865 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 AL590084.1-201ENST00000407885 387 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.91□□□□□ -1.62
COL3A1P02461 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.91□□□□□ -1.62
COL3A1P02461 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC4.91□□□□□ -1.62
COL3A1P02461 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL3A1P02461 AC092641.1-201ENST00000440229 772 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 AC245517.2-201ENST00000442890 346 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.91□□□□□ -1.62
COL3A1P02461 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL3A1P02461 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.91□□□□□ -1.62
COL3A1P02461 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.91□□□□□ -1.62
COL3A1P02461 OR5H4P-201ENST00000510851 923 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.91□□□□□ -1.62
COL3A1P02461 RN7SKP13-201ENST00000515933 244 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 AC104417.1-201ENST00000523974 751 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 OR8I1P-201ENST00000529291 931 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 AHI1-217ENST00000534469 680 ntTSL 3 BASIC4.91□□□□□ -1.62
COL3A1P02461 AL121766.1-201ENST00000547436 487 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 SERPINE4P-201ENST00000554978 281 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 AC103968.1-201ENST00000557841 573 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 MIR3915-201ENST00000578518 97 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 AC022662.1-201ENST00000580252 331 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC4.91□□□□□ -1.62
COL3A1P02461 VN1R81P-201ENST00000602085 372 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 AL020997.3-201ENST00000602843 359 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 AC138749.5-201ENST00000611461 208 ntBASIC4.91□□□□□ -1.62
COL3A1P02461 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.91□□□□□ -1.62
COL3A1P02461 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL3A1P02461 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL3A1P02461 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL3A1P02461 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL3A1P02461 CR381670.1-201ENST00000624291 1693 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.9□□□□□ -1.62
COL3A1P02461 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL3A1P02461 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
COL3A1P02461 HMGB3P20-201ENST00000417997 600 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.9□□□□□ -1.62
COL3A1P02461 DPRXP1-201ENST00000426312 460 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AL160175.1-201ENST00000428124 247 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC4.9□□□□□ -1.62
COL3A1P02461 HMGN2P31-201ENST00000432430 273 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AL606490.7-201ENST00000433136 191 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AC098614.3-201ENST00000438957 440 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AC068135.1-201ENST00000446164 246 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AC073587.1-201ENST00000447093 876 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AC098824.1-201ENST00000453565 980 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 NECAP1P2-201ENST00000455668 727 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.9□□□□□ -1.62
COL3A1P02461 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.62
COL3A1P02461 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.9□□□□□ -1.62
COL3A1P02461 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL3A1P02461 CDC42P4-201ENST00000510507 563 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.9□□□□□ -1.62
COL3A1P02461 PAICSP4-201ENST00000517543 1253 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.9□□□□□ -1.62
COL3A1P02461 SUMO2P20-201ENST00000520803 283 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC4.9□□□□□ -1.62
COL3A1P02461 MIR548S-201ENST00000581352 82 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.9□□□□□ -1.62
COL3A1P02461 MIR3611-201ENST00000584484 83 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.9□□□□□ -1.62
COL3A1P02461 AL356055.1-201ENST00000602528 446 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 MTCO3P22-201ENST00000603219 784 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AC021749.1-201ENST00000604322 607 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AC091965.4-201ENST00000607691 587 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AF246928.1-201ENST00000623768 87 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.9□□□□□ -1.62
COL3A1P02461 AL034408.1-202ENST00000636088 415 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL3A1P02461 MFSD8-236ENST00000641509 4050 ntBASIC4.9□□□□□ -1.62
COL3A1P02461 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL3A1P02461 AL078595.2-201ENST00000605309 1780 ntBASIC4.9□□□□□ -1.63
COL3A1P02461 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL3A1P02461 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.89□□□□□ -1.63
COL3A1P02461 AC018555.1-201ENST00000567548 1980 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL3A1P02461 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL3A1P02461 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL3A1P02461 RNU4-51P-201ENST00000364206 140 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 Y_RNA.553-201ENST00000384670 102 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 ATP5F1P4-201ENST00000397288 746 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.89□□□□□ -1.63
COL3A1P02461 AC245052.5-201ENST00000416320 649 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.89□□□□□ -1.63
COL3A1P02461 RPL7P53-201ENST00000421245 739 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms