Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CLDN9O95484 OTUD4P1-201ENST00000237841 3067 ntBASIC3.4□□□□□ -1.87
CLDN9O95484 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.39□□□□□ -1.87
CLDN9O95484 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
CLDN9O95484 FRG1CP-201ENST00000358464 769 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 SNORD65C-201ENST00000390962 71 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CLDN9O95484 SSXP10-201ENST00000402595 565 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.39□□□□□ -1.87
CLDN9O95484 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.39□□□□□ -1.87
CLDN9O95484 MTND2P16-201ENST00000419987 799 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 AC244098.2-201ENST00000422068 99 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 AC246680.2-201ENST00000422106 389 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.39□□□□□ -1.87
CLDN9O95484 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.39□□□□□ -1.87
CLDN9O95484 GTF2IP12-201ENST00000456547 356 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 SNORD105B-201ENST00000458770 79 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 AC078857.1-201ENST00000469870 667 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.39□□□□□ -1.87
CLDN9O95484 AL049830.2-201ENST00000480072 201 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 RNF138P1-201ENST00000502765 546 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.39□□□□□ -1.87
CLDN9O95484 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.39□□□□□ -1.87
CLDN9O95484 RNU6-416P-201ENST00000516265 103 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 SNORA67.7-201ENST00000516664 135 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.39□□□□□ -1.87
CLDN9O95484 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.39□□□□□ -1.87
CLDN9O95484 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC3.39□□□□□ -1.87
CLDN9O95484 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.39□□□□□ -1.87
CLDN9O95484 AC006116.10-201ENST00000591836 581 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 SNRPGP15-201ENST00000600149 222 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 AC010591.1-201ENST00000603941 649 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.39□□□□□ -1.87
CLDN9O95484 AC016542.1-201ENST00000608259 493 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.39□□□□□ -1.87
CLDN9O95484 AL592295.2-201ENST00000612578 206 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
CLDN9O95484 U4.6-201ENST00000621618 127 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 AC005858.4-201ENST00000623191 700 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 AC110801.1-201ENST00000623590 212 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.39□□□□□ -1.87
CLDN9O95484 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.39□□□□□ -1.87
CLDN9O95484 MIR4278-201ENST00000636094 69 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.39□□□□□ -1.87
CLDN9O95484 SAGE4P-201ENST00000442271 3381 ntBASIC3.39□□□□□ -1.87
CLDN9O95484 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CLDN9O95484 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.39□□□□□ -1.87
CLDN9O95484 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLDN9O95484 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CLDN9O95484 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLDN9O95484 SNORA31-201ENST00000362607 130 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CLDN9O95484 RNU6-1226P-201ENST00000384317 107 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 MIR184-201ENST00000384962 84 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 RN7SKP159-201ENST00000410657 292 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 RPL31P2-201ENST00000413849 377 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 UBE2V1P9-201ENST00000414760 368 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 RPS3AP9-201ENST00000417027 792 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC3.38□□□□□ -1.87
CLDN9O95484 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC3.38□□□□□ -1.87
CLDN9O95484 AL009174.1-201ENST00000426577 416 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.38□□□□□ -1.87
CLDN9O95484 AC006994.1-201ENST00000438212 839 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 RPL12P26-201ENST00000452430 487 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.38□□□□□ -1.87
CLDN9O95484 AC005726.1-201ENST00000494679 427 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.38□□□□□ -1.87
CLDN9O95484 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLDN9O95484 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.38□□□□□ -1.87
CLDN9O95484 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.38□□□□□ -1.87
CLDN9O95484 RN7SKP18-201ENST00000516005 275 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 SNORA70.18-201ENST00000516696 98 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 IGKV2D-36-201ENST00000518643 226 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.38□□□□□ -1.87
CLDN9O95484 AC124293.1-201ENST00000530034 493 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 CR383656.14-201ENST00000551951 406 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.38□□□□□ -1.87
CLDN9O95484 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.38□□□□□ -1.87
CLDN9O95484 MIR5047-201ENST00000579212 100 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 AC022069.1-201ENST00000582910 658 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 MIR3158-1-201ENST00000583596 81 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 MIR4298-201ENST00000584380 73 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC3.38□□□□□ -1.87
CLDN9O95484 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.38□□□□□ -1.87
CLDN9O95484 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.38□□□□□ -1.87
CLDN9O95484 AC020914.6-201ENST00000594327 272 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.38□□□□□ -1.87
CLDN9O95484 AC026741.1-201ENST00000605892 482 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.38□□□□□ -1.87
CLDN9O95484 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
CLDN9O95484 MIR6075-201ENST00000620782 95 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.38□□□□□ -1.87
CLDN9O95484 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.38□□□□□ -1.87
CLDN9O95484 AL079305.1-201ENST00000623159 3008 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 AL359893.1-201ENST00000447628 1580 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLDN9O95484 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLDN9O95484 ZNF37BP-203ENST00000452306 1352 ntBASIC3.38□□□□□ -1.87
CLDN9O95484 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CLDN9O95484 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms