Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.69□□□□□ -1.82
BRCA1P38398 RPL21P40-201ENST00000428586 483 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 C1DP3-201ENST00000455013 423 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 SEC11B-201ENST00000518383 499 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 AC106734.1-201ENST00000568646 663 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 AC064859.1-201ENST00000624741 174 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.69□□□□□ -1.82
BRCA1P38398 CR381670.1-201ENST00000624291 1693 ntBASIC3.69□□□□□ -1.82
BRCA1P38398 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.69□□□□□ -1.82
BRCA1P38398 RPS4XP5-202ENST00000449995 1334 ntBASIC3.68□□□□□ -1.82
BRCA1P38398 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC3.68□□□□□ -1.82
BRCA1P38398 AC240504.1-201ENST00000395709 845 ntBASIC3.68□□□□□ -1.82
BRCA1P38398 LAP3P1-201ENST00000403648 294 ntBASIC3.68□□□□□ -1.82
BRCA1P38398 AC093716.1-201ENST00000435923 377 ntBASIC3.68□□□□□ -1.82
BRCA1P38398 AC092013.1-201ENST00000438795 332 ntBASIC3.68□□□□□ -1.82
BRCA1P38398 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.68□□□□□ -1.82
BRCA1P38398 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.68□□□□□ -1.82
BRCA1P38398 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.68□□□□□ -1.82
BRCA1P38398 NECAP1P2-201ENST00000455668 727 ntBASIC3.68□□□□□ -1.82
BRCA1P38398 AC083906.5-201ENST00000503722 328 ntBASIC3.68□□□□□ -1.82
BRCA1P38398 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.68□□□□□ -1.82
BRCA1P38398 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.68□□□□□ -1.82
BRCA1P38398 AC010200.2-201ENST00000605098 235 ntBASIC3.68□□□□□ -1.82
BRCA1P38398 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
BRCA1P38398 NCAPGP1-201ENST00000505112 1814 ntBASIC3.68□□□□□ -1.82
BRCA1P38398 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
BRCA1P38398 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
BRCA1P38398 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC3.67□□□□□ -1.82
BRCA1P38398 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
BRCA1P38398 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.67□□□□□ -1.82
BRCA1P38398 RPL23AP4-201ENST00000427757 463 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.67□□□□□ -1.82
BRCA1P38398 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.67□□□□□ -1.82
BRCA1P38398 EEF1B2P7-201ENST00000451177 676 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 RNU7-27P-201ENST00000459281 62 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 AC104687.1-201ENST00000485829 412 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 RN7SL20P-201ENST00000488827 297 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 PCNAP1-201ENST00000505363 709 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 RNU1-143P-201ENST00000516296 146 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 Y_RNA.673-201ENST00000516306 88 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 AC068714.1-201ENST00000559623 800 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 AC099489.2-201ENST00000574976 260 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 U1.23-201ENST00000610293 146 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 RNU1-68P-201ENST00000615382 146 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 U1.39-201ENST00000621562 146 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
BRCA1P38398 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
BRCA1P38398 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
BRCA1P38398 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
BRCA1P38398 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
BRCA1P38398 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.67□□□□□ -1.82
BRCA1P38398 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC3.67□□□□□ -1.82
BRCA1P38398 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 CST9LP2-201ENST00000437612 320 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.67□□□□□ -1.82
BRCA1P38398 AC021205.1-201ENST00000468797 348 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.67□□□□□ -1.82
BRCA1P38398 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.67□□□□□ -1.82
BRCA1P38398 uc_338.32-201ENST00000615087 172 ntBASIC3.67□□□□□ -1.82
BRCA1P38398 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.66□□□□□ -1.82
BRCA1P38398 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
BRCA1P38398 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
BRCA1P38398 AC046144.1-201ENST00000478559 1853 ntBASIC3.66□□□□□ -1.82
BRCA1P38398 AP006437.1-201ENST00000641440 3685 ntBASIC3.66□□□□□ -1.82
BRCA1P38398 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC3.66□□□□□ -1.82
BRCA1P38398 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC3.66□□□□□ -1.82
BRCA1P38398 RHEBP3-201ENST00000411920 351 ntBASIC3.66□□□□□ -1.82
BRCA1P38398 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
BRCA1P38398 MTND6P18-201ENST00000439477 513 ntBASIC3.66□□□□□ -1.82
BRCA1P38398 NIPA2P5-201ENST00000452282 464 ntBASIC3.66□□□□□ -1.82
BRCA1P38398 PRDX3P4-201ENST00000470828 747 ntBASIC3.66□□□□□ -1.82
BRCA1P38398 MTCYBP19-201ENST00000517463 1124 ntBASIC3.66□□□□□ -1.82
BRCA1P38398 AC090281.1-201ENST00000523019 276 ntBASIC3.66□□□□□ -1.82
BRCA1P38398 OR5G4P-201ENST00000525251 760 ntBASIC3.66□□□□□ -1.82
BRCA1P38398 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.66□□□□□ -1.82
BRCA1P38398 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC3.66□□□□□ -1.82
BRCA1P38398 AC079089.3-201ENST00000603094 673 ntBASIC3.66□□□□□ -1.82
BRCA1P38398 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.66□□□□□ -1.82
BRCA1P38398 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
BRCA1P38398 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
BRCA1P38398 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
BRCA1P38398 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
BRCA1P38398 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
BRCA1P38398 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.65□□□□□ -1.82
BRCA1P38398 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.65□□□□□ -1.82
BRCA1P38398 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
BRCA1P38398 RPS12P5-201ENST00000423449 371 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 AC005189.1-201ENST00000431286 310 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 MTCO1P57-201ENST00000432182 261 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 UBE2V2P3-201ENST00000433562 437 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 AL353597.2-202ENST00000434901 373 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 SKP1P1-201ENST00000438081 489 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 AL513328.1-201ENST00000446460 224 ntBASIC3.65□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms