Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.09□□□□□ -1.91
USF1P22415 AC037471.2-201ENST00000564941 598 ntBASIC3.09□□□□□ -1.91
USF1P22415 MTCYBP28-201ENST00000566728 1132 ntBASIC3.09□□□□□ -1.91
USF1P22415 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.09□□□□□ -1.91
USF1P22415 AC090616.5-202ENST00000582111 297 ntBASIC3.09□□□□□ -1.91
USF1P22415 ZNF415P1-201ENST00000582279 1166 ntBASIC3.09□□□□□ -1.91
USF1P22415 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.09□□□□□ -1.91
USF1P22415 AC008687.2-201ENST00000597865 520 ntBASIC3.09□□□□□ -1.91
USF1P22415 AL390816.3-201ENST00000604527 1066 ntBASIC3.09□□□□□ -1.91
USF1P22415 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.09□□□□□ -1.91
USF1P22415 AC003001.2-201ENST00000616294 831 ntBASIC3.09□□□□□ -1.91
USF1P22415 AC073569.3-201ENST00000619055 682 ntBASIC3.09□□□□□ -1.91
USF1P22415 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.09□□□□□ -1.91
USF1P22415 MIR4278-201ENST00000636094 69 ntBASIC3.09□□□□□ -1.91
USF1P22415 AC119674.1-207ENST00000641355 633 ntBASIC3.09□□□□□ -1.91
USF1P22415 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
USF1P22415 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.09□□□□□ -1.92
USF1P22415 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.92
USF1P22415 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.08□□□□□ -1.92
USF1P22415 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
USF1P22415 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
USF1P22415 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
USF1P22415 MIR1250-201ENST00000408098 113 ntBASIC3.08□□□□□ -1.92
USF1P22415 AL158825.1-201ENST00000414735 521 ntBASIC3.08□□□□□ -1.92
USF1P22415 EI24P1-201ENST00000416584 867 ntBASIC3.08□□□□□ -1.92
USF1P22415 BX842559.1-201ENST00000419615 532 ntBASIC3.08□□□□□ -1.92
USF1P22415 AL158156.1-201ENST00000422509 473 ntBASIC3.08□□□□□ -1.92
USF1P22415 AC005517.2-201ENST00000424673 553 ntBASIC3.08□□□□□ -1.92
USF1P22415 HIGD1AP12-201ENST00000427832 281 ntBASIC3.08□□□□□ -1.92
USF1P22415 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.08□□□□□ -1.92
USF1P22415 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.08□□□□□ -1.92
USF1P22415 MTCO3P43-201ENST00000440974 771 ntBASIC3.08□□□□□ -1.92
USF1P22415 DNAJC19P8-201ENST00000452887 259 ntBASIC3.08□□□□□ -1.92
USF1P22415 RPL23AP14-201ENST00000468281 468 ntBASIC3.08□□□□□ -1.92
USF1P22415 RN7SL330P-201ENST00000469709 307 ntBASIC3.08□□□□□ -1.92
USF1P22415 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
USF1P22415 AC084198.1-201ENST00000477747 402 ntBASIC3.08□□□□□ -1.92
USF1P22415 AC015724.1-201ENST00000478577 156 ntBASIC3.08□□□□□ -1.92
USF1P22415 RN7SKP13-201ENST00000515933 244 ntBASIC3.08□□□□□ -1.92
USF1P22415 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
USF1P22415 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.08□□□□□ -1.92
USF1P22415 OR4R3P-201ENST00000525084 838 ntBASIC3.08□□□□□ -1.92
USF1P22415 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
USF1P22415 OR5D17P-201ENST00000531492 978 ntBASIC3.08□□□□□ -1.92
USF1P22415 AL121766.1-201ENST00000547436 487 ntBASIC3.08□□□□□ -1.92
USF1P22415 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.08□□□□□ -1.92
USF1P22415 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.08□□□□□ -1.92
USF1P22415 MIR4504-201ENST00000577413 92 ntBASIC3.08□□□□□ -1.92
USF1P22415 MIR3200-201ENST00000580767 85 ntBASIC3.08□□□□□ -1.92
USF1P22415 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC3.08□□□□□ -1.92
USF1P22415 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.08□□□□□ -1.92
USF1P22415 AC007566.2-201ENST00000603642 413 ntBASIC3.08□□□□□ -1.92
USF1P22415 AL163642.2-201ENST00000604722 1019 ntBASIC3.08□□□□□ -1.92
USF1P22415 BRDTP1-201ENST00000605735 677 ntBASIC3.08□□□□□ -1.92
USF1P22415 AL442067.2-201ENST00000614033 363 ntBASIC3.08□□□□□ -1.92
USF1P22415 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC3.08□□□□□ -1.92
USF1P22415 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.08□□□□□ -1.92
USF1P22415 AL109659.3-201ENST00000624985 950 ntBASIC3.08□□□□□ -1.92
USF1P22415 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.08□□□□□ -1.92
USF1P22415 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
USF1P22415 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
USF1P22415 PABPC1P7-201ENST00000413177 1513 ntBASIC3.08□□□□□ -1.92
USF1P22415 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
USF1P22415 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
USF1P22415 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
USF1P22415 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
USF1P22415 AL365440.1-201ENST00000436135 2167 ntBASIC3.07□□□□□ -1.92
USF1P22415 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.07□□□□□ -1.92
USF1P22415 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
USF1P22415 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.07□□□□□ -1.92
USF1P22415 RNU6-272P-201ENST00000411028 104 ntBASIC3.07□□□□□ -1.92
USF1P22415 AC244098.2-201ENST00000422068 99 ntBASIC3.07□□□□□ -1.92
USF1P22415 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.07□□□□□ -1.92
USF1P22415 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.07□□□□□ -1.92
USF1P22415 CYCSP4-201ENST00000429682 331 ntBASIC3.07□□□□□ -1.92
USF1P22415 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.07□□□□□ -1.92
USF1P22415 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
USF1P22415 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.07□□□□□ -1.92
USF1P22415 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.07□□□□□ -1.92
USF1P22415 SNORA71B-202ENST00000439232 272 ntBASIC3.07□□□□□ -1.92
USF1P22415 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.07□□□□□ -1.92
USF1P22415 RPS26P56-201ENST00000444468 240 ntBASIC3.07□□□□□ -1.92
USF1P22415 MTND1P33-201ENST00000446251 917 ntBASIC3.07□□□□□ -1.92
USF1P22415 RN7SL601P-201ENST00000471221 293 ntBASIC3.07□□□□□ -1.92
USF1P22415 TRBV12-2-201ENST00000489763 344 ntBASIC3.07□□□□□ -1.92
USF1P22415 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.07□□□□□ -1.92
USF1P22415 RAC1P2-201ENST00000511164 579 ntBASIC3.07□□□□□ -1.92
USF1P22415 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.07□□□□□ -1.92
USF1P22415 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.07□□□□□ -1.92
USF1P22415 RN7SKP83-201ENST00000516512 178 ntBASIC3.07□□□□□ -1.92
USF1P22415 RANP9-201ENST00000519957 271 ntBASIC3.07□□□□□ -1.92
USF1P22415 AF279873.1-201ENST00000523393 313 ntBASIC3.07□□□□□ -1.92
USF1P22415 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.07□□□□□ -1.92
USF1P22415 AC103843.2-201ENST00000530523 682 ntBASIC3.07□□□□□ -1.92
USF1P22415 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.07□□□□□ -1.92
USF1P22415 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.07□□□□□ -1.92
USF1P22415 LINC00557-201ENST00000563184 1279 ntBASIC3.07□□□□□ -1.92
USF1P22415 ZNF192P1-203ENST00000565888 810 ntBASIC3.07□□□□□ -1.92
USF1P22415 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.07□□□□□ -1.92
USF1P22415 AC012254.4-201ENST00000588843 273 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms