Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC011352.3-201ENST00000505162 593 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC002456.2-201ENST00000509356 380 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.97□□□□□ -1.77
MSH3P20585 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.97□□□□□ -1.77
MSH3P20585 RNU6-1129P-201ENST00000515964 104 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC087808.1-201ENST00000520501 361 ntBASIC3.97□□□□□ -1.77
MSH3P20585 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.97□□□□□ -1.77
MSH3P20585 AP000926.4-201ENST00000527351 454 ntBASIC3.97□□□□□ -1.77
MSH3P20585 TOMM20P2-201ENST00000540082 421 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.97□□□□□ -1.77
MSH3P20585 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.97□□□□□ -1.77
MSH3P20585 AC020914.4-201ENST00000597690 277 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC013444.2-201ENST00000603317 787 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC010680.3-201ENST00000604215 520 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AL390816.3-201ENST00000604527 1066 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.97□□□□□ -1.77
MSH3P20585 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.97□□□□□ -1.77
MSH3P20585 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.97□□□□□ -1.77
MSH3P20585 AL591424.2-201ENST00000617023 128 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AL139089.1-201ENST00000620372 975 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC078883.4-201ENST00000623218 367 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.97□□□□□ -1.77
MSH3P20585 AL773545.4-201ENST00000637262 310 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AL513478.4-201ENST00000641636 310 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.97□□□□□ -1.77
MSH3P20585 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSH3P20585 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.97□□□□□ -1.77
MSH3P20585 AL139811.1-201ENST00000424779 2299 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC027287.1-201ENST00000553115 1453 ntBASIC3.97□□□□□ -1.77
MSH3P20585 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSH3P20585 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
MSH3P20585 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
MSH3P20585 AC012321.1-201ENST00000561622 1588 ntBASIC3.97□□□□□ -1.77
MSH3P20585 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
MSH3P20585 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.96□□□□□ -1.77
MSH3P20585 AC007529.1-201ENST00000418574 2178 ntBASIC3.96□□□□□ -1.78
MSH3P20585 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.96□□□□□ -1.78
MSH3P20585 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.96□□□□□ -1.78
MSH3P20585 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
MSH3P20585 OR5H2-201ENST00000355273 945 ntBASIC3.96□□□□□ -1.78
MSH3P20585 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
MSH3P20585 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.96□□□□□ -1.78
MSH3P20585 RNA5SP80-201ENST00000410475 111 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC3.96□□□□□ -1.78
MSH3P20585 RPL7AP73-201ENST00000413490 353 ntBASIC3.96□□□□□ -1.78
MSH3P20585 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC3.96□□□□□ -1.78
MSH3P20585 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC3.96□□□□□ -1.78
MSH3P20585 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.96□□□□□ -1.78
MSH3P20585 MRPS36P1-201ENST00000421291 307 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AL117339.2-201ENST00000430475 180 ntBASIC3.96□□□□□ -1.78
MSH3P20585 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.96□□□□□ -1.78
MSH3P20585 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.96□□□□□ -1.78
MSH3P20585 AC096638.2-201ENST00000434965 711 ntBASIC3.96□□□□□ -1.78
MSH3P20585 RPL7P28-201ENST00000437739 740 ntBASIC3.96□□□□□ -1.78
MSH3P20585 PPIAP17-201ENST00000438507 471 ntBASIC3.96□□□□□ -1.78
MSH3P20585 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.96□□□□□ -1.78
MSH3P20585 MTND2P22-201ENST00000444325 1033 ntBASIC3.96□□□□□ -1.78
MSH3P20585 RPL7P59-201ENST00000447700 943 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.96□□□□□ -1.78
MSH3P20585 ANKRD26P4-201ENST00000455755 950 ntBASIC3.96□□□□□ -1.78
MSH3P20585 PNPLA4P1-201ENST00000458328 305 ntBASIC3.96□□□□□ -1.78
MSH3P20585 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.96□□□□□ -1.78
MSH3P20585 RPL31P61-201ENST00000496160 376 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AC116353.3-201ENST00000511215 249 ntBASIC3.96□□□□□ -1.78
MSH3P20585 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.96□□□□□ -1.78
MSH3P20585 IGHV3-32-201ENST00000519182 355 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AF279873.1-201ENST00000523393 313 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.96□□□□□ -1.78
MSH3P20585 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.96□□□□□ -1.78
MSH3P20585 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
MSH3P20585 MTND2P26-201ENST00000528255 1029 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AP003461.1-201ENST00000528866 78 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AP000619.3-201ENST00000535634 1127 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AC005832.3-201ENST00000537929 631 ntBASIC3.96□□□□□ -1.78
MSH3P20585 GNRHR2P1-201ENST00000555315 631 ntBASIC3.96□□□□□ -1.78
MSH3P20585 DUXAP1-201ENST00000556632 463 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AC022968.1-201ENST00000567372 442 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.96□□□□□ -1.78
MSH3P20585 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.96□□□□□ -1.78
MSH3P20585 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AC020910.2-201ENST00000603635 610 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AC069304.3-201ENST00000603938 1084 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AL451074.6-201ENST00000608512 729 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AL360219.1-201ENST00000610230 366 ntBASIC3.96□□□□□ -1.78
MSH3P20585 uc_338.32-201ENST00000615087 172 ntBASIC3.96□□□□□ -1.78
MSH3P20585 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.96□□□□□ -1.78
MSH3P20585 AC131159.1-201ENST00000621854 213 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AC124312.6-202ENST00000623624 418 ntBASIC3.96□□□□□ -1.78
MSH3P20585 AC007490.1-201ENST00000624321 703 ntBASIC3.96□□□□□ -1.78
MSH3P20585 MIR4278-201ENST00000636094 69 ntBASIC3.96□□□□□ -1.78
MSH3P20585 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSH3P20585 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
MSH3P20585 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
MSH3P20585 BDP1P-201ENST00000582658 1990 ntBASIC3.96□□□□□ -1.78
MSH3P20585 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
MSH3P20585 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
MSH3P20585 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
MSH3P20585 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.95□□□□□ -1.78
MSH3P20585 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms