Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD4P09016 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD4P09016 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.61□□□□□ -1.83
HOXD4P09016 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD4P09016 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD4P09016 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD4P09016 AC090751.1-201ENST00000566966 267 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXD4P09016 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD4P09016 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD4P09016 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXD4P09016 ELOCP35-201ENST00000604289 336 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AC115621.1-201ENST00000604653 858 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AC009948.4-201ENST00000604692 675 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 MIR6868-201ENST00000611215 58 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
HOXD4P09016 AL138478.1-201ENST00000612252 832 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AC008121.2-201ENST00000614647 523 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 VN1R7P-201ENST00000619242 903 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AC013470.4-201ENST00000619978 986 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AC120349.3-201ENST00000624377 529 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 AC090229.1-201ENST00000590983 1609 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.61□□□□□ -1.83
HOXD4P09016 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD4P09016 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD4P09016 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD4P09016 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD4P09016 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD4P09016 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXD4P09016 FAM91A3P-201ENST00000456826 2544 ntBASIC3.61□□□□□ -1.83
HOXD4P09016 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.6□□□□□ -1.83
HOXD4P09016 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD4P09016 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD4P09016 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
HOXD4P09016 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.6□□□□□ -1.83
HOXD4P09016 RNA5SP97-201ENST00000365006 84 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 Y_RNA.333-201ENST00000365274 102 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AL136310.1-201ENST00000404926 654 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 MIR1251-201ENST00000408552 70 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 SNORA3.3-201ENST00000408712 125 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD4P09016 AC004022.2-201ENST00000413824 193 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AC069157.1-201ENST00000421749 137 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD4P09016 YME1L1P1-201ENST00000429435 297 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AL358472.1-201ENST00000431295 329 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AC011742.1-201ENST00000431448 434 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXD4P09016 EEF1A1P39-201ENST00000440791 250 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 HMGB3P6-201ENST00000444896 598 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AC112492.1-201ENST00000449607 712 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXD4P09016 AC005410.1-202ENST00000460347 485 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 RPL21P11-201ENST00000461458 483 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 XACT-201ENST00000468762 497 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD4P09016 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD4P09016 TRBV8-2-201ENST00000475637 270 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXD4P09016 RNU7-143P-201ENST00000516781 65 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 MTCO3P15-201ENST00000526563 574 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 PDCL2P2-201ENST00000533651 189 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXD4P09016 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD4P09016 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD4P09016 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD4P09016 AC009097.3-201ENST00000563557 1018 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AC023813.2-201ENST00000564321 469 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 RPL23AP87-202ENST00000573039 466 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD4P09016 AC067852.4-201ENST00000590314 478 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD4P09016 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD4P09016 AC025811.1-201ENST00000604312 472 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 BNIP3P4-201ENST00000604946 565 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AC107952.2-201ENST00000606048 486 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXD4P09016 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD4P09016 AC090246.1-201ENST00000616499 426 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AC021755.4-201ENST00000616620 456 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AC048344.4-201ENST00000619744 527 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AP000484.1-201ENST00000620067 1252 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
HOXD4P09016 ATE1-AS1-202ENST00000636460 506 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 AC090897.3-201ENST00000636973 1157 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXD4P09016 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD4P09016 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HOXD4P09016 AC025125.1-201ENST00000624743 1922 ntBASIC3.6□□□□□ -1.83
HOXD4P09016 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXD4P09016 OTUD4P1-201ENST00000237841 3067 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD4P09016 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
HOXD4P09016 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD4P09016 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD4P09016 SNORA63.1-201ENST00000362493 131 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 RNU6-1339P-201ENST00000363574 91 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 SNORD35B-201ENST00000363660 87 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 RNU4-28P-201ENST00000364739 141 ntBASIC3.59□□□□□ -1.83
HOXD4P09016 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD4P09016 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms