Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MTND4P22-201ENST00000413116 1169 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 GTF2IP3-201ENST00000433887 494 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC9P31274 AL592437.1-201ENST00000443781 492 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC9P31274 AL929288.2-201ENST00000446368 407 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 CDC42P1-201ENST00000456658 548 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 RN7SL504P-201ENST00000494496 287 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC9P31274 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXC9P31274 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC9P31274 AC119751.1-201ENST00000513357 765 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC9P31274 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC9P31274 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC9P31274 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC9P31274 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC9P31274 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC9P31274 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC9P31274 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXC9P31274 AC009948.4-201ENST00000604692 675 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 AL513477.2-201ENST00000607858 568 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC9P31274 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXC9P31274 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.62□□□□□ -1.67
HOXC9P31274 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.62□□□□□ -1.67
HOXC9P31274 MTND4P31-201ENST00000425607 1343 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HOXC9P31274 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
HOXC9P31274 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.62□□□□□ -1.67
HOXC9P31274 AC009313.2-201ENST00000417893 1941 ntBASIC4.62□□□□□ -1.67
HOXC9P31274 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.62□□□□□ -1.67
HOXC9P31274 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXC9P31274 AC087190.4-201ENST00000574616 8334 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
HOXC9P31274 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXC9P31274 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXC9P31274 AL512430.2-201ENST00000406786 339 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXC9P31274 TRIM60P5Y-201ENST00000413946 574 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 MTND4P3-201ENST00000417829 541 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXC9P31274 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 RPS24P8-201ENST00000431490 402 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXC9P31274 AL450263.2-201ENST00000439400 589 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 PTGES3P1-201ENST00000439531 483 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 AL356535.1-201ENST00000440335 398 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 AL353748.1-201ENST00000440753 474 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 AL136126.1-201ENST00000473603 402 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC4.61□□□□□ -1.67
HOXC9P31274 RPS26P15-201ENST00000488067 348 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXC9P31274 HNRNPKP5-201ENST00000515300 253 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXC9P31274 AC008489.1-201ENST00000524271 483 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXC9P31274 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXC9P31274 MTCO1P40-201ENST00000574371 625 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 MIR5680-201ENST00000577577 84 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.61□□□□□ -1.67
HOXC9P31274 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
HOXC9P31274 BNIP3P4-201ENST00000604946 565 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 AC013244.3-201ENST00000605614 388 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 AC009974.1-201ENST00000608881 455 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXC9P31274 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
HOXC9P31274 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
HOXC9P31274 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.61□□□□□ -1.67
HOXC9P31274 AC096656.1-201ENST00000623826 1364 ntBASIC4.61□□□□□ -1.67
HOXC9P31274 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC4.61□□□□□ -1.67
HOXC9P31274 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
HOXC9P31274 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
HOXC9P31274 AC005332.5-201ENST00000591222 2919 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 AC092079.1-201ENST00000558620 1985 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 RNA5SP374-201ENST00000362939 125 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 RNU6-236P-201ENST00000363886 106 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 RNU6-224P-201ENST00000384055 107 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 MIR92A2-201ENST00000385299 75 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 U3.19-201ENST00000390893 196 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 ANAPC10P1-201ENST00000395991 556 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.6□□□□□ -1.67
HOXC9P31274 OR4K6P-201ENST00000416478 897 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXC9P31274 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXC9P31274 AC092648.1-201ENST00000425870 423 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXC9P31274 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXC9P31274 MTCYBP15-201ENST00000433123 1127 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 OR10R1P-201ENST00000441524 1141 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.6□□□□□ -1.67
HOXC9P31274 ANP32BP2-201ENST00000454525 545 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 XACT-201ENST00000468762 497 ntTSL 5 BASIC4.6□□□□□ -1.67
HOXC9P31274 AC079203.1-201ENST00000487972 404 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 AL035404.1-201ENST00000497982 568 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 AC025445.1-201ENST00000502728 300 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 BTF3L4P4-201ENST00000506381 449 ntBASIC4.6□□□□□ -1.67
HOXC9P31274 IGKV2-36-201ENST00000519999 223 ntBASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms