Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.45□□□□□ -1.7
BDNFP23560 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.45□□□□□ -1.7
BDNFP23560 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.45□□□□□ -1.7
BDNFP23560 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.45□□□□□ -1.7
BDNFP23560 AC067959.1-201ENST00000604334 379 ntBASIC4.45□□□□□ -1.7
BDNFP23560 AC080013.4-201ENST00000607624 649 ntBASIC4.45□□□□□ -1.7
BDNFP23560 AP001521.1-201ENST00000609150 300 ntBASIC4.45□□□□□ -1.7
BDNFP23560 AC015813.4-201ENST00000610469 179 ntBASIC4.45□□□□□ -1.7
BDNFP23560 AC010975.3-201ENST00000618727 978 ntBASIC4.45□□□□□ -1.7
BDNFP23560 AL049777.1-201ENST00000622740 518 ntBASIC4.45□□□□□ -1.7
BDNFP23560 U6.98-201ENST00000637157 84 ntBASIC4.45□□□□□ -1.7
BDNFP23560 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.45□□□□□ -1.7
BDNFP23560 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
BDNFP23560 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
BDNFP23560 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.44□□□□□ -1.7
BDNFP23560 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
BDNFP23560 AC138915.3-201ENST00000562908 1389 ntBASIC4.44□□□□□ -1.7
BDNFP23560 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
BDNFP23560 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
BDNFP23560 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
BDNFP23560 AC067945.1-201ENST00000342609 618 ntBASIC4.44□□□□□ -1.7
BDNFP23560 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
BDNFP23560 RNU4-51P-201ENST00000364206 140 ntBASIC4.44□□□□□ -1.7
BDNFP23560 RNU6-173P-201ENST00000364215 104 ntBASIC4.44□□□□□ -1.7
BDNFP23560 RNA5SP515-201ENST00000364570 118 ntBASIC4.44□□□□□ -1.7
BDNFP23560 RNU6-1074P-201ENST00000383995 104 ntBASIC4.44□□□□□ -1.7
BDNFP23560 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
BDNFP23560 MTHFD2P2-201ENST00000407725 247 ntBASIC4.44□□□□□ -1.7
BDNFP23560 MIR1193-201ENST00000408109 78 ntBASIC4.44□□□□□ -1.7
BDNFP23560 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.44□□□□□ -1.7
BDNFP23560 TRAPPC2P4-201ENST00000421750 331 ntBASIC4.44□□□□□ -1.7
BDNFP23560 C1DP1-201ENST00000426049 402 ntBASIC4.44□□□□□ -1.7
BDNFP23560 HMGN2P20-201ENST00000437531 273 ntBASIC4.44□□□□□ -1.7
BDNFP23560 RPL23AP46-201ENST00000438548 490 ntBASIC4.44□□□□□ -1.7
BDNFP23560 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.44□□□□□ -1.7
BDNFP23560 RFC5P1-201ENST00000454419 874 ntBASIC4.44□□□□□ -1.7
BDNFP23560 OR9M1P-201ENST00000459641 921 ntBASIC4.44□□□□□ -1.7
BDNFP23560 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.44□□□□□ -1.7
BDNFP23560 AC093278.1-201ENST00000494700 600 ntBASIC4.44□□□□□ -1.7
BDNFP23560 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.44□□□□□ -1.7
BDNFP23560 HMGB3P15-201ENST00000507326 574 ntBASIC4.44□□□□□ -1.7
BDNFP23560 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.44□□□□□ -1.7
BDNFP23560 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.44□□□□□ -1.7
BDNFP23560 AC108064.1-201ENST00000513791 460 ntBASIC4.44□□□□□ -1.7
BDNFP23560 RN7SKP13-201ENST00000515933 244 ntBASIC4.44□□□□□ -1.7
BDNFP23560 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.44□□□□□ -1.7
BDNFP23560 AP001636.2-201ENST00000525517 696 ntBASIC4.44□□□□□ -1.7
BDNFP23560 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC4.44□□□□□ -1.7
BDNFP23560 AC125611.1-201ENST00000549563 229 ntBASIC4.44□□□□□ -1.7
BDNFP23560 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.44□□□□□ -1.7
BDNFP23560 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.44□□□□□ -1.7
BDNFP23560 MIR3160-1-201ENST00000577972 85 ntBASIC4.44□□□□□ -1.7
BDNFP23560 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.44□□□□□ -1.7
BDNFP23560 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.44□□□□□ -1.7
BDNFP23560 AL138960.2-201ENST00000625145 535 ntBASIC4.44□□□□□ -1.7
BDNFP23560 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC4.44□□□□□ -1.7
BDNFP23560 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
BDNFP23560 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
BDNFP23560 AP005901.5-201ENST00000545779 1796 ntBASIC4.44□□□□□ -1.7
BDNFP23560 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
BDNFP23560 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
BDNFP23560 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
BDNFP23560 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
BDNFP23560 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.44□□□□□ -1.7
BDNFP23560 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.44□□□□□ -1.7
BDNFP23560 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
BDNFP23560 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.43□□□□□ -1.7
BDNFP23560 CDR1-202ENST00000625883 1485 ntBASIC4.43□□□□□ -1.7
BDNFP23560 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
BDNFP23560 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
BDNFP23560 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.43□□□□□ -1.7
BDNFP23560 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
BDNFP23560 RNU6-657P-201ENST00000383904 107 ntBASIC4.43□□□□□ -1.7
BDNFP23560 MRPS36P1-201ENST00000421291 307 ntBASIC4.43□□□□□ -1.7
BDNFP23560 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC4.43□□□□□ -1.7
BDNFP23560 RBMY1KP-201ENST00000423480 476 ntBASIC4.43□□□□□ -1.7
BDNFP23560 AC073335.1-201ENST00000427776 363 ntBASIC4.43□□□□□ -1.7
BDNFP23560 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC4.43□□□□□ -1.7
BDNFP23560 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.43□□□□□ -1.7
BDNFP23560 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.43□□□□□ -1.7
BDNFP23560 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.43□□□□□ -1.7
BDNFP23560 AL672167.3-201ENST00000465951 960 ntBASIC4.43□□□□□ -1.7
BDNFP23560 HMGB1P25-201ENST00000468402 607 ntBASIC4.43□□□□□ -1.7
BDNFP23560 AC108734.3-201ENST00000481241 1165 ntBASIC4.43□□□□□ -1.7
BDNFP23560 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC4.43□□□□□ -1.7
BDNFP23560 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.43□□□□□ -1.7
BDNFP23560 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.43□□□□□ -1.7
BDNFP23560 MYL12AP1-201ENST00000518490 515 ntBASIC4.43□□□□□ -1.7
BDNFP23560 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.43□□□□□ -1.7
BDNFP23560 MTND5P21-201ENST00000531961 522 ntBASIC4.43□□□□□ -1.7
BDNFP23560 AP000619.3-201ENST00000535634 1127 ntBASIC4.43□□□□□ -1.7
BDNFP23560 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.43□□□□□ -1.7
BDNFP23560 YWHAZP1-201ENST00000556286 722 ntBASIC4.43□□□□□ -1.7
BDNFP23560 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.43□□□□□ -1.7
BDNFP23560 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.43□□□□□ -1.7
BDNFP23560 AC022655.2-201ENST00000577280 318 ntBASIC4.43□□□□□ -1.7
BDNFP23560 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.43□□□□□ -1.7
BDNFP23560 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.43□□□□□ -1.7
BDNFP23560 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.43□□□□□ -1.7
BDNFP23560 AC021749.1-201ENST00000604322 607 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms