Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC145207.9-201ENST00000623802 325 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 MIR3653-201ENST00000625572 110 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AC135776.4-201ENST00000624300 1904 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 RNF6P1-201ENST00000444889 1784 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 AL035425.3-201ENST00000564206 4996 ntBASIC1.77□□□□□ -2.13
LINC00643Q86TS7 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC1.77□□□□□ -2.13
LINC00643Q86TS7 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AL031985.1-201ENST00000392713 418 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 ST13P16-201ENST00000401760 781 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AL355379.1-201ENST00000405542 640 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AL138880.1-201ENST00000405824 642 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC007064.1-201ENST00000412238 351 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 RPS7P15-201ENST00000415804 584 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC007394.1-201ENST00000421941 531 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 RPS15AP29-201ENST00000445539 400 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 RPL29P29-201ENST00000448725 423 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC023141.9-201ENST00000458734 412 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 RPL5P24-201ENST00000463742 885 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 RN7SL323P-201ENST00000494712 295 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 RNA5SP96-201ENST00000516041 107 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 RNU6-1073P-201ENST00000517182 106 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC034205.1-201ENST00000520621 638 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AP003385.6-201ENST00000531603 374 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC005833.3-202ENST00000544741 770 ntAPPRIS P1 TSL 3 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC137768.1-201ENST00000549998 553 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC121758.2-201ENST00000553271 193 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 CASC16-202ENST00000563844 610 ntTSL 3 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 SNORD95-201ENST00000579879 68 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC090616.5-202ENST00000582111 297 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 MIR3187-201ENST00000583431 70 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 RNU4-89P-201ENST00000607443 133 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AL355493.4-201ENST00000618530 292 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC004808.2-201ENST00000627965 773 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.76□□□□□ -2.13
LINC00643Q86TS7 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
LINC00643Q86TS7 AC005336.3-201ENST00000623833 2679 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 Z82209.1-201ENST00000422141 2135 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AL359693.1-201ENST00000614959 2407 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 SNORD9-201ENST00000362566 104 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AC025750.1-201ENST00000399891 379 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 U3.37-201ENST00000408528 213 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 RN7SKP273-201ENST00000411392 314 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 RPL34P26-201ENST00000445636 354 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AL031659.1-201ENST00000447075 539 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 RN7SL354P-201ENST00000469282 294 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 RN7SL303P-201ENST00000469773 251 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 HMGB1P38-201ENST00000490557 577 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 UBE2Q2P10-201ENST00000514854 900 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 SNORA70.18-201ENST00000516696 98 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 ZDHHC20P3-201ENST00000531576 336 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 CENPUP2-201ENST00000555897 1186 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 CCDC58P3-201ENST00000590792 430 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC1.75□□□□□ -2.13
LINC00643Q86TS7 AC005046.1-201ENST00000608515 625 ntBASIC1.75□□□□□ -2.13
LINC00643Q86TS7 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 156.3 ms