Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.71□□□□□ -1.66
CUX1P39880 AC018690.1-201ENST00000608144 626 ntBASIC4.71□□□□□ -1.66
CUX1P39880 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CUX1P39880 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.7□□□□□ -1.66
CUX1P39880 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CUX1P39880 AC020633.1-201ENST00000468439 2247 ntBASIC4.7□□□□□ -1.66
CUX1P39880 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CUX1P39880 SNORD56.3-201ENST00000363507 71 ntBASIC4.7□□□□□ -1.66
CUX1P39880 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
CUX1P39880 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC4.7□□□□□ -1.66
CUX1P39880 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC4.7□□□□□ -1.66
CUX1P39880 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.7□□□□□ -1.66
CUX1P39880 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CUX1P39880 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC4.7□□□□□ -1.66
CUX1P39880 RN7SKP60-201ENST00000516985 239 ntBASIC4.7□□□□□ -1.66
CUX1P39880 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.7□□□□□ -1.66
CUX1P39880 MIR4524B-201ENST00000581569 115 ntBASIC4.7□□□□□ -1.66
CUX1P39880 AC046144.1-201ENST00000478559 1853 ntBASIC4.7□□□□□ -1.66
CUX1P39880 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
CUX1P39880 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CUX1P39880 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
CUX1P39880 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CUX1P39880 RN7SKP58-201ENST00000411010 305 ntBASIC4.69□□□□□ -1.66
CUX1P39880 GTF2IP23-201ENST00000423746 351 ntBASIC4.69□□□□□ -1.66
CUX1P39880 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.69□□□□□ -1.66
CUX1P39880 AL365503.1-201ENST00000605247 905 ntBASIC4.69□□□□□ -1.66
CUX1P39880 MIR7843-201ENST00000622274 79 ntBASIC4.69□□□□□ -1.66
CUX1P39880 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC4.69□□□□□ -1.66
CUX1P39880 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CUX1P39880 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CUX1P39880 RNA5SP68-201ENST00000363885 119 ntBASIC4.68□□□□□ -1.66
CUX1P39880 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CUX1P39880 HNRNPDLP1-201ENST00000412834 550 ntBASIC4.68□□□□□ -1.66
CUX1P39880 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC4.68□□□□□ -1.66
CUX1P39880 AC127526.1-201ENST00000417526 366 ntBASIC4.68□□□□□ -1.66
CUX1P39880 AP000936.3-201ENST00000438127 255 ntBASIC4.68□□□□□ -1.66
CUX1P39880 AC003982.1-202ENST00000469928 248 ntBASIC4.68□□□□□ -1.66
CUX1P39880 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC4.68□□□□□ -1.66
CUX1P39880 AP000916.1-201ENST00000533869 835 ntBASIC4.68□□□□□ -1.66
CUX1P39880 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC4.68□□□□□ -1.66
CUX1P39880 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CUX1P39880 ELF2P3-201ENST00000445099 1506 ntBASIC4.68□□□□□ -1.66
CUX1P39880 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CUX1P39880 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
CUX1P39880 AC003685.2-201ENST00000422795 395 ntBASIC4.67□□□□□ -1.66
CUX1P39880 OR2AS1P-201ENST00000427827 319 ntBASIC4.67□□□□□ -1.66
CUX1P39880 SRIP2-201ENST00000428470 166 ntBASIC4.67□□□□□ -1.66
CUX1P39880 FTH1P6-201ENST00000430768 320 ntBASIC4.67□□□□□ -1.66
CUX1P39880 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC4.67□□□□□ -1.66
CUX1P39880 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC4.67□□□□□ -1.66
CUX1P39880 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CUX1P39880 AC006445.2-201ENST00000510061 472 ntBASIC4.67□□□□□ -1.66
CUX1P39880 RNA5SP24-201ENST00000516478 95 ntBASIC4.67□□□□□ -1.66
CUX1P39880 IGKV2D-23-201ENST00000518179 286 ntBASIC4.67□□□□□ -1.66
CUX1P39880 OR10D4P-201ENST00000525892 951 ntBASIC4.67□□□□□ -1.66
CUX1P39880 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC4.67□□□□□ -1.66
CUX1P39880 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.67□□□□□ -1.66
CUX1P39880 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
CUX1P39880 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CUX1P39880 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CUX1P39880 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.67□□□□□ -1.66
CUX1P39880 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CUX1P39880 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CUX1P39880 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CUX1P39880 AC010095.1-201ENST00000443543 144 ntBASIC4.67□□□□□ -1.66
CUX1P39880 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC4.67□□□□□ -1.66
CUX1P39880 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC4.67□□□□□ -1.66
CUX1P39880 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC4.67□□□□□ -1.66
CUX1P39880 AC105918.1-201ENST00000474399 838 ntBASIC4.67□□□□□ -1.66
CUX1P39880 RNA5SP282-201ENST00000516355 108 ntBASIC4.67□□□□□ -1.66
CUX1P39880 RNA5SP148-201ENST00000516527 94 ntBASIC4.67□□□□□ -1.66
CUX1P39880 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CUX1P39880 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC4.67□□□□□ -1.66
CUX1P39880 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.67□□□□□ -1.66
CUX1P39880 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC4.67□□□□□ -1.66
CUX1P39880 AL592295.2-201ENST00000612578 206 ntBASIC4.67□□□□□ -1.66
CUX1P39880 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CUX1P39880 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CUX1P39880 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
CUX1P39880 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC4.66□□□□□ -1.66
CUX1P39880 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CUX1P39880 RNA5SP289-201ENST00000362332 137 ntBASIC4.66□□□□□ -1.66
CUX1P39880 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
CUX1P39880 RPS7P13-201ENST00000413955 498 ntBASIC4.66□□□□□ -1.66
CUX1P39880 RN7SL633P-201ENST00000488974 297 ntBASIC4.66□□□□□ -1.66
CUX1P39880 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CUX1P39880 SNORA31.21-201ENST00000517180 77 ntBASIC4.66□□□□□ -1.66
CUX1P39880 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.66□□□□□ -1.66
CUX1P39880 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC4.66□□□□□ -1.66
CUX1P39880 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.66□□□□□ -1.66
CUX1P39880 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
CUX1P39880 AC064859.1-201ENST00000624741 174 ntBASIC4.66□□□□□ -1.66
CUX1P39880 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.66□□□□□ -1.66
CUX1P39880 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
CUX1P39880 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.66□□□□□ -1.66
CUX1P39880 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
CUX1P39880 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
CUX1P39880 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
CUX1P39880 SNORA46-201ENST00000384762 135 ntBASIC4.65□□□□□ -1.67
CUX1P39880 SKINT1L-201ENST00000401057 817 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms