Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 LINC00561-201ENST00000565815 2738 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 SNORA31-201ENST00000362607 130 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 RNU6-115P-201ENST00000364310 107 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 RNU1-44P-201ENST00000384453 163 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 MIR122-201ENST00000385044 85 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 MT-TC-201ENST00000387405 66 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 RSL24D1P1-201ENST00000404972 493 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 MIR1911-201ENST00000410783 80 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 HSPE1P12-201ENST00000412576 301 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC027644.1-201ENST00000419595 298 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 OFD1P18Y-201ENST00000420889 959 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC244098.2-201ENST00000422068 99 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 IFNNP1-201ENST00000429219 553 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC244505.3-201ENST00000454598 187 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 RPL7P49-201ENST00000471402 708 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC106872.2-201ENST00000494303 480 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC068305.1-201ENST00000497406 726 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC048346.1-201ENST00000510247 144 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 RNA5SP135-201ENST00000517019 125 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 DUXAP2-201ENST00000519198 589 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC090151.1-201ENST00000520784 730 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AP000619.3-201ENST00000535634 1127 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 CYCSP30-201ENST00000546447 172 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC087897.1-201ENST00000550134 156 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AGGF1P8-201ENST00000562979 1000 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC012182.1-201ENST00000570133 895 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 MTND6P33-201ENST00000571794 183 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC068790.5-201ENST00000602741 355 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AL020997.3-201ENST00000602843 359 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC019176.2-201ENST00000611579 315 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 AC006213.4-201ENST00000616184 634 ntBASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PCDHGA1Q9Y5H4 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 RNA5SP124-201ENST00000362739 110 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 SNORA73.2-201ENST00000364946 201 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 OR1L1-202ENST00000373686 1083 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 RNU6-925P-201ENST00000384629 104 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 RNU6-837P-201ENST00000391056 108 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC009237.5-201ENST00000414271 501 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 SFR1P2-201ENST00000421841 730 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC114973.1-201ENST00000429057 632 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 RPEP2-201ENST00000432149 701 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 RPL21P112-201ENST00000434403 463 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 PTGES3P1-201ENST00000439531 483 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 RPL7P59-201ENST00000447700 943 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC004022.1-201ENST00000447766 1066 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 ANP32BP2-201ENST00000454525 545 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 HMGN2P7-201ENST00000456186 273 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 CEACAMP4-201ENST00000457676 421 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 BNIP3P41-201ENST00000503774 571 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC006499.5-201ENST00000505037 514 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC008837.1-201ENST00000511513 412 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC005798.1-201ENST00000513715 387 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 RNA5SP154-201ENST00000516193 111 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 SNORA70.14-201ENST00000516205 110 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 RNU2-58P-201ENST00000516403 183 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 RNU6-1028P-201ENST00000517164 93 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 IGKV2D-23-201ENST00000518179 286 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC026403.1-201ENST00000518938 295 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC006518.1-201ENST00000541449 943 ntBASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.96□□□□□ -1.78
PCDHGA1Q9Y5H4 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms