Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS4AQ9UN37 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.53□□□□□ -1.69
VPS4AQ9UN37 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.53□□□□□ -1.69
VPS4AQ9UN37 ATP8A2P3-201ENST00000426792 1536 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AL121657.1-201ENST00000327215 531 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 MIR23B-201ENST00000384832 97 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 SNORD96B-201ENST00000386148 79 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 MIR708-201ENST00000390708 88 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 RN7SKP106-201ENST00000410832 272 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AL953862.1-201ENST00000423016 168 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC073335.1-201ENST00000427776 363 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 DLGAP5P1-201ENST00000430307 464 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 MED14P1-201ENST00000430517 648 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 NRBF2P3-201ENST00000432731 865 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 KCTD10P1-201ENST00000434203 625 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 UBE2FP3-201ENST00000436366 524 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 YWHAZP8-201ENST00000436935 731 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 RPS24P1-201ENST00000438550 371 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 EEF1A1P1-201ENST00000447052 739 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC013828.1-201ENST00000481845 158 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC006499.5-201ENST00000505037 514 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 MRPS33P2-201ENST00000507850 322 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 STMN1P2-201ENST00000508435 439 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 RN7SKP21-201ENST00000516503 220 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC087276.1-201ENST00000529659 480 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 OR6C7P-201ENST00000547875 934 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC090502.2-201ENST00000549267 280 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 CYCSP2-201ENST00000558168 301 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC012435.1-202ENST00000568772 240 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC074051.3-201ENST00000570238 358 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC119751.7-201ENST00000600494 245 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC025165.5-201ENST00000602802 578 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AL356218.2-201ENST00000605264 187 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 COX6CP4-201ENST00000605798 228 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AL121873.1-201ENST00000616013 524 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC009878.1-201ENST00000621819 340 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 CR381572.2-201ENST00000624852 397 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC092184.1-201ENST00000625042 715 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC090582.1-201ENST00000636321 199 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 CYP1D1P-201ENST00000416662 1433 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 DHX40P1-201ENST00000588725 1412 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC117529.2-201ENST00000512159 2068 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 AC114546.3-201ENST00000623582 1734 ntBASIC4.52□□□□□ -1.69
VPS4AQ9UN37 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS4AQ9UN37 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 OR5BR1P-201ENST00000524992 1330 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AL079343.1-201ENST00000572358 1771 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 RPL21P132-201ENST00000331267 462 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 RNU6-1122P-201ENST00000384449 107 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 Y_RNA.553-201ENST00000384670 102 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 SNORA57.1-201ENST00000391227 145 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC073264.1-201ENST00000411508 416 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 CYCSP46-201ENST00000423569 204 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 CHIAP3-201ENST00000423668 1133 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AL031736.2-201ENST00000426573 787 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AL512649.1-201ENST00000428997 581 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 MTND1P30-201ENST00000441241 901 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 COX6CP2-201ENST00000444980 225 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 RPL23AP56-201ENST00000460778 453 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 RPL30P11-201ENST00000495304 339 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 PGBD4P4-201ENST00000509673 613 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC026402.1-201ENST00000513642 170 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 Y_RNA.695-201ENST00000516715 107 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 151.1 ms