Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MIR8058-201ENST00000615737 89 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 PLCE1P1-201ENST00000622094 305 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS39Q96JC1 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS39Q96JC1 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS39Q96JC1 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 CR381670.1-201ENST00000624291 1693 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS39Q96JC1 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS39Q96JC1 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS39Q96JC1 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS39Q96JC1 HSPA8P1-201ENST00000425843 1833 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS39Q96JC1 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 RNU6-481P-201ENST00000384194 107 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 RPL31P1-201ENST00000398116 372 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 RNA5SP317-201ENST00000410176 116 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 RNU4-78P-201ENST00000410940 126 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 RNA5SP311-201ENST00000411290 116 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 RAB28P1-201ENST00000411517 641 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 HSFY1P1-201ENST00000423928 1178 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 RPS7P2-201ENST00000435134 607 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 U3.44-201ENST00000458938 192 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 AC092754.2-201ENST00000463506 460 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 RNA5SP315-201ENST00000516340 116 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 RNU6-467P-201ENST00000517027 110 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 RNA5SP312-201ENST00000517068 116 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 IGJP1-201ENST00000522682 475 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 MED28P5-201ENST00000528254 438 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
VPS39Q96JC1 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 AC120057.2-201ENST00000571520 271 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 MIR3908-201ENST00000579798 126 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 AC079684.1-201ENST00000621405 437 ntBASIC3.79□□□□□ -1.8
VPS39Q96JC1 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS39Q96JC1 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.79□□□□□ -1.8
VPS39Q96JC1 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS39Q96JC1 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
VPS39Q96JC1 MTND5P31-201ENST00000419366 1374 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS39Q96JC1 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS39Q96JC1 RNU1-85P-201ENST00000364127 164 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 RNA5SP235-201ENST00000365411 114 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 MIR591-201ENST00000385290 95 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 RNA5SP129-201ENST00000410276 118 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 AL009174.1-201ENST00000426577 416 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 RSL24D1P6-201ENST00000426934 401 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 ARF4P2-201ENST00000430209 526 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 UBE2V1P6-201ENST00000430840 422 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 SKP1P1-201ENST00000438081 489 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 AC006480.1-201ENST00000449887 378 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 NANOGP10-201ENST00000453325 895 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 AC010285.1-201ENST00000470580 392 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 AL049830.2-201ENST00000480072 201 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 RPL21P47-201ENST00000483696 477 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS39Q96JC1 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS39Q96JC1 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 AC074051.3-201ENST00000570238 358 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS39Q96JC1 AL355812.1-201ENST00000603215 216 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 DPRXP5-201ENST00000604662 539 ntBASIC3.78□□□□□ -1.8
VPS39Q96JC1 AP004247.3-201ENST00000608682 624 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms