Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC4.04□□□□□ -1.76
VMP1Q96GC9 SLC31A1P1-201ENST00000451221 567 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC244505.3-201ENST00000454598 187 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.04□□□□□ -1.76
VMP1Q96GC9 RN7SL385P-201ENST00000468873 276 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 RN7SL585P-201ENST00000470538 280 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.04□□□□□ -1.76
VMP1Q96GC9 RN7SKP122-201ENST00000515923 296 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC138701.1-201ENST00000524329 714 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.04□□□□□ -1.76
VMP1Q96GC9 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.04□□□□□ -1.76
VMP1Q96GC9 RPL23AP97-201ENST00000568955 471 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.04□□□□□ -1.76
VMP1Q96GC9 AL163642.2-201ENST00000604722 1019 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC124312.4-201ENST00000605533 310 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC083809.1-201ENST00000615051 472 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC008083.4-201ENST00000615076 444 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC018755.4-201ENST00000619715 454 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC006249.1-201ENST00000621223 471 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 MIR6810-201ENST00000622701 70 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC008785.1-201ENST00000624475 456 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.04□□□□□ -1.76
VMP1Q96GC9 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC4.04□□□□□ -1.76
VMP1Q96GC9 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC4.04□□□□□ -1.76
VMP1Q96GC9 FP325313.1-201ENST00000638228 703 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
VMP1Q96GC9 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC4.04□□□□□ -1.76
VMP1Q96GC9 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VMP1Q96GC9 AL136164.4-201ENST00000625013 2135 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VMP1Q96GC9 NUP58P1-201ENST00000502546 1738 ntBASIC4.04□□□□□ -1.76
VMP1Q96GC9 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
VMP1Q96GC9 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.03□□□□□ -1.76
VMP1Q96GC9 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
VMP1Q96GC9 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.03□□□□□ -1.76
VMP1Q96GC9 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
VMP1Q96GC9 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
VMP1Q96GC9 RNA5SP366-201ENST00000365454 123 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
VMP1Q96GC9 AC097374.1-203ENST00000400783 485 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 Z98941.1-201ENST00000407764 100 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VMP1Q96GC9 MTCO3P1-205ENST00000422088 832 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 AL049610.1-201ENST00000423374 372 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 BLOC1S2P1-201ENST00000428431 301 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC4.03□□□□□ -1.76
VMP1Q96GC9 AF228730.2-201ENST00000438784 848 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VMP1Q96GC9 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC4.03□□□□□ -1.76
VMP1Q96GC9 NECAP1P2-201ENST00000455668 727 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.03□□□□□ -1.76
VMP1Q96GC9 AC092754.2-201ENST00000463506 460 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 RPL35AP15-201ENST00000468042 339 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 RPL35P6-201ENST00000490024 372 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 RNA5SP468-201ENST00000516782 93 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VMP1Q96GC9 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
VMP1Q96GC9 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VMP1Q96GC9 MIR3186-201ENST00000577404 85 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 AC008507.2-201ENST00000588402 1176 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 AL583856.2-201ENST00000606298 543 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 AC092653.1-201ENST00000608509 531 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 AC099676.1-201ENST00000608886 657 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 AC092954.1-201ENST00000609121 445 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 AC005962.2-201ENST00000611427 652 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 MIR6716-201ENST00000613413 80 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 MIR6830-201ENST00000636015 70 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.03□□□□□ -1.76
VMP1Q96GC9 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VMP1Q96GC9 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VMP1Q96GC9 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.03□□□□□ -1.76
VMP1Q96GC9 TNPO1P3-201ENST00000436471 2662 ntBASIC4.03□□□□□ -1.76
VMP1Q96GC9 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VMP1Q96GC9 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.77
VMP1Q96GC9 AL158163.1-201ENST00000603915 1649 ntBASIC4.03□□□□□ -1.77
VMP1Q96GC9 CASC19-261ENST00000641853 1638 ntBASIC4.03□□□□□ -1.77
VMP1Q96GC9 ZNF962P-201ENST00000443465 3140 ntBASIC4.02□□□□□ -1.77
VMP1Q96GC9 SUCLA2P2-201ENST00000417269 1309 ntBASIC4.02□□□□□ -1.77
VMP1Q96GC9 GDI2P1-201ENST00000429312 1336 ntBASIC4.02□□□□□ -1.77
VMP1Q96GC9 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VMP1Q96GC9 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VMP1Q96GC9 FAM3C2-201ENST00000312214 681 ntBASIC4.02□□□□□ -1.77
VMP1Q96GC9 SNORA70.2-201ENST00000364506 135 ntBASIC4.02□□□□□ -1.77
VMP1Q96GC9 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VMP1Q96GC9 RN7SKP56-201ENST00000410513 331 ntBASIC4.02□□□□□ -1.77
VMP1Q96GC9 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VMP1Q96GC9 BTF3P8-201ENST00000414577 526 ntBASIC4.02□□□□□ -1.77
VMP1Q96GC9 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.02□□□□□ -1.77
VMP1Q96GC9 AC092634.6-201ENST00000418558 192 ntBASIC4.02□□□□□ -1.77
VMP1Q96GC9 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.02□□□□□ -1.77
VMP1Q96GC9 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC4.02□□□□□ -1.77
VMP1Q96GC9 AP000949.1-201ENST00000438328 629 ntBASIC4.02□□□□□ -1.77
VMP1Q96GC9 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC4.02□□□□□ -1.77
VMP1Q96GC9 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.02□□□□□ -1.77
VMP1Q96GC9 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.02□□□□□ -1.77
VMP1Q96GC9 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC4.02□□□□□ -1.77
VMP1Q96GC9 U3.44-201ENST00000458938 192 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms