Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 HMGB3P10-201ENST00000434734 572 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.77□□□□□ -1.49
SOX4Q06945 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.77□□□□□ -1.49
SOX4Q06945 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SOX4Q06945 AC104651.2-201ENST00000447549 528 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 AL590639.1-201ENST00000456484 337 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC5.77□□□□□ -1.49
SOX4Q06945 AC078785.3-201ENST00000476607 425 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 RPS18P6-201ENST00000476880 458 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC5.77□□□□□ -1.49
SOX4Q06945 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.77□□□□□ -1.49
SOX4Q06945 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SOX4Q06945 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.77□□□□□ -1.49
SOX4Q06945 AC005741.1-201ENST00000511094 432 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC5.77□□□□□ -1.49
SOX4Q06945 AC105417.1-201ENST00000514691 285 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC5.77□□□□□ -1.49
SOX4Q06945 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC5.77□□□□□ -1.49
SOX4Q06945 RNU6-1220P-201ENST00000517126 108 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 RN7SKP256-201ENST00000517201 314 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.77□□□□□ -1.49
SOX4Q06945 AC022616.3-201ENST00000523940 148 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.77□□□□□ -1.49
SOX4Q06945 OR4R1P-201ENST00000529879 463 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.77□□□□□ -1.49
SOX4Q06945 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.77□□□□□ -1.49
SOX4Q06945 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.77□□□□□ -1.49
SOX4Q06945 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.77□□□□□ -1.49
SOX4Q06945 AC006270.2-201ENST00000578523 652 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
SOX4Q06945 AC080078.3-201ENST00000605407 463 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 AL080274.1-201ENST00000605565 220 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 AL355472.4-201ENST00000610233 626 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 AC084781.2-201ENST00000615568 161 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 AC022106.2-201ENST00000620114 757 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.77□□□□□ -1.49
SOX4Q06945 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.77□□□□□ -1.49
SOX4Q06945 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
SOX4Q06945 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.77□□□□□ -1.49
SOX4Q06945 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
SOX4Q06945 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SOX4Q06945 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.77□□□□□ -1.49
SOX4Q06945 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SOX4Q06945 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
SOX4Q06945 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.76□□□□□ -1.49
SOX4Q06945 AL049780.3-201ENST00000624612 1583 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
SOX4Q06945 AC107021.2-201ENST00000567714 2095 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AC105074.1-201ENST00000623380 3095 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
SOX4Q06945 AC009962.1-201ENST00000567327 3813 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
SOX4Q06945 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.76□□□□□ -1.49
SOX4Q06945 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SOX4Q06945 AC007938.2-201ENST00000604666 2634 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
SOX4Q06945 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.76□□□□□ -1.49
SOX4Q06945 AC073343.1-201ENST00000328239 651 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 RNU1-146P-201ENST00000364015 165 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 RNY1P12-201ENST00000364251 105 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.76□□□□□ -1.49
SOX4Q06945 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC5.76□□□□□ -1.49
SOX4Q06945 AL358176.2-201ENST00000425769 204 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC5.76□□□□□ -1.49
SOX4Q06945 AC010881.1-201ENST00000433830 235 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 CBX1P4-201ENST00000439415 457 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AC073465.2-201ENST00000440938 498 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AC012512.1-201ENST00000446594 718 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AC004980.3-201ENST00000447046 365 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AC002381.1-201ENST00000447049 280 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.76□□□□□ -1.49
SOX4Q06945 AL389915.2-201ENST00000454576 441 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
SOX4Q06945 MTND5P22-201ENST00000458380 195 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 HMGN2P26-201ENST00000463169 339 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 RPL7P22-201ENST00000466005 733 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AC010301.1-201ENST00000473936 355 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC5.76□□□□□ -1.49
SOX4Q06945 CR383656.1-201ENST00000484916 377 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC5.76□□□□□ -1.49
SOX4Q06945 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC5.76□□□□□ -1.49
SOX4Q06945 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.76□□□□□ -1.49
SOX4Q06945 SCARNA20.4-201ENST00000516969 131 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AC104986.1-201ENST00000517978 436 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC5.76□□□□□ -1.49
SOX4Q06945 AC090572.1-201ENST00000519251 160 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.76□□□□□ -1.49
SOX4Q06945 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.76□□□□□ -1.49
SOX4Q06945 BNIP3P6-201ENST00000549284 499 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC5.76□□□□□ -1.49
SOX4Q06945 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.76□□□□□ -1.49
SOX4Q06945 RN7SL356P-201ENST00000582228 248 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 SNORD39.3-201ENST00000584451 71 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.76□□□□□ -1.49
SOX4Q06945 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.76□□□□□ -1.49
SOX4Q06945 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC5.76□□□□□ -1.49
SOX4Q06945 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC5.76□□□□□ -1.49
SOX4Q06945 AC090425.1-201ENST00000610007 140 ntBASIC5.76□□□□□ -1.49
SOX4Q06945 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms