Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.43□□□□□ -1.86
COL4A4P53420 SETP8-201ENST00000435341 628 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 RPS24P13-201ENST00000442520 397 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AL513343.1-201ENST00000451818 792 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 FGF7P3-201ENST00000454645 303 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 MTATP6P9-201ENST00000515039 680 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 snoU109.6-201ENST00000516831 118 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 OR4R2P-201ENST00000530815 597 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC3.43□□□□□ -1.86
COL4A4P53420 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 TGIF1P1-201ENST00000558095 802 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.43□□□□□ -1.86
COL4A4P53420 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.43□□□□□ -1.86
COL4A4P53420 VN1R87P-201ENST00000596706 487 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AC245884.10-201ENST00000597355 337 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.43□□□□□ -1.86
COL4A4P53420 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AL365503.1-201ENST00000605247 905 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AL365400.2-201ENST00000605604 902 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AC107905.1-201ENST00000616204 426 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.43□□□□□ -1.86
COL4A4P53420 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 CU459211.1-201ENST00000635667 749 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 AC068620.4-201ENST00000636730 1182 ntBASIC3.43□□□□□ -1.86
COL4A4P53420 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
COL4A4P53420 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL4A4P53420 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
COL4A4P53420 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL4A4P53420 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
COL4A4P53420 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL4A4P53420 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL4A4P53420 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC3.42□□□□□ -1.86
COL4A4P53420 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.42□□□□□ -1.86
COL4A4P53420 MIR423-201ENST00000362201 94 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 RNA5SP184-201ENST00000411071 108 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 VPS26BP1-201ENST00000417155 755 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 AL354692.1-201ENST00000423044 315 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 SRIP2-201ENST00000428470 166 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC3.42□□□□□ -1.86
COL4A4P53420 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.42□□□□□ -1.86
COL4A4P53420 RPS6P2-201ENST00000454208 705 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 FCF1P6-201ENST00000456841 595 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 RPL23AP67-201ENST00000465341 474 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 MTND3P6-201ENST00000485242 339 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC3.42□□□□□ -1.86
COL4A4P53420 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC3.42□□□□□ -1.86
COL4A4P53420 YWHAEP4-201ENST00000505390 198 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 AC111000.5-201ENST00000506559 1178 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 RN7SKP132-201ENST00000516001 208 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 Y_RNA.676-201ENST00000516393 96 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC3.42□□□□□ -1.86
COL4A4P53420 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.42□□□□□ -1.86
COL4A4P53420 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC3.42□□□□□ -1.86
COL4A4P53420 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC3.42□□□□□ -1.86
COL4A4P53420 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.42□□□□□ -1.86
COL4A4P53420 HMGB1P6-201ENST00000569046 646 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.42□□□□□ -1.86
COL4A4P53420 AL390838.2-201ENST00000602394 274 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC3.42□□□□□ -1.86
COL4A4P53420 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC3.42□□□□□ -1.86
COL4A4P53420 AC104763.3-201ENST00000613765 618 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 AL354950.1-201ENST00000614150 568 ntBASIC3.42□□□□□ -1.86
COL4A4P53420 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC3.42□□□□□ -1.86
COL4A4P53420 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL4A4P53420 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL4A4P53420 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL4A4P53420 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL4A4P53420 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL4A4P53420 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
COL4A4P53420 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL4A4P53420 AC107027.3-201ENST00000565095 3473 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.41□□□□□ -1.86
COL4A4P53420 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.41□□□□□ -1.86
COL4A4P53420 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL4A4P53420 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL4A4P53420 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.41□□□□□ -1.86
COL4A4P53420 RNU6-925P-201ENST00000384629 104 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 AL138878.1-201ENST00000405131 347 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.41□□□□□ -1.86
COL4A4P53420 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.41□□□□□ -1.86
COL4A4P53420 AL513174.1-201ENST00000423182 629 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 AC073069.1-201ENST00000428657 441 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 UBE2V1P6-201ENST00000430840 422 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 Z80107.1-201ENST00000436830 412 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 PPIAP17-201ENST00000438507 471 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
COL4A4P53420 AC008628.1-201ENST00000508663 265 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.41□□□□□ -1.86
COL4A4P53420 AP003049.1-201ENST00000529418 457 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 OR8X1P-201ENST00000534542 869 ntBASIC3.41□□□□□ -1.86
COL4A4P53420 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC3.41□□□□□ -1.86
COL4A4P53420 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.41□□□□□ -1.86
COL4A4P53420 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms