Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 OR4A45P-201ENST00000529954 901 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 PARP1P2-201ENST00000556806 195 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 AC141257.3-201ENST00000572906 215 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 AL590392.1-201ENST00000604960 446 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 AL354760.1-201ENST00000608357 643 ntBASIC3.82□□□□□ -1.8
VPS39Q96JC1 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS39Q96JC1 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
VPS39Q96JC1 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
VPS39Q96JC1 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
VPS39Q96JC1 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.81□□□□□ -1.8
VPS39Q96JC1 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS39Q96JC1 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS39Q96JC1 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS39Q96JC1 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS39Q96JC1 MTND4P34-201ENST00000572715 1371 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 AL672296.1-201ENST00000427780 2158 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS39Q96JC1 AL121657.1-201ENST00000327215 531 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS39Q96JC1 Y_RNA.493-201ENST00000384422 102 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 MTHFD2P2-201ENST00000407725 247 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 RPL23AP47-201ENST00000408017 460 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 RNA5SP56-201ENST00000410277 118 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 HIGD1AP12-201ENST00000427832 281 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 AC114755.5-201ENST00000447760 831 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 AL034418.1-201ENST00000448675 860 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS39Q96JC1 NPM1P13-201ENST00000452663 865 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 RPS24P6-201ENST00000452670 400 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS39Q96JC1 snoU13.24-201ENST00000458998 104 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 RN7SL385P-201ENST00000468873 276 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 AL024509.2-201ENST00000493462 493 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS39Q96JC1 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS39Q96JC1 RAC1P2-201ENST00000511164 579 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS39Q96JC1 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.81□□□□□ -1.8
VPS39Q96JC1 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.81□□□□□ -1.8
VPS39Q96JC1 AC136624.4-201ENST00000573044 370 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.81□□□□□ -1.8
VPS39Q96JC1 AC005412.1-201ENST00000580812 1049 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 AL669831.4-202ENST00000590817 238 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 AC098483.2-201ENST00000603158 454 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 AC245100.7-201ENST00000609678 442 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS39Q96JC1 AC006963.1-201ENST00000624003 1052 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 AC097372.4-201ENST00000625025 466 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC3.81□□□□□ -1.8
VPS39Q96JC1 AC244205.2-202ENST00000635781 342 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 AC007256.1-201ENST00000392253 2765 ntBASIC3.81□□□□□ -1.8
VPS39Q96JC1 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS39Q96JC1 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
VPS39Q96JC1 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
VPS39Q96JC1 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS39Q96JC1 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
VPS39Q96JC1 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS39Q96JC1 CEP170P1-201ENST00000502249 4587 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS39Q96JC1 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
VPS39Q96JC1 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 MIR423-201ENST00000362201 94 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 RNU6-263P-201ENST00000363811 107 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 ZNF602P-201ENST00000405929 924 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 AL158050.1-201ENST00000416077 457 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 AC008173.1-201ENST00000418901 264 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 AL929288.2-201ENST00000446368 407 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 RNU7-170P-201ENST00000459303 61 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 AC078857.1-201ENST00000469870 667 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 RPS4XP15-201ENST00000489210 795 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 RN7SKP83-201ENST00000516512 178 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 AC124293.1-201ENST00000530034 493 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.8□□□□□ -1.8
VPS39Q96JC1 AC099489.2-201ENST00000574976 260 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 AC103881.1-201ENST00000603476 538 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 AL592436.1-201ENST00000605135 558 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 AL591034.3-201ENST00000605511 685 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 AL513477.2-201ENST00000607858 568 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 AC013468.1-201ENST00000608680 598 ntBASIC3.8□□□□□ -1.8
VPS39Q96JC1 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 140.6 ms