Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX4Q06945 AC121334.2-201ENST00000605387 271 ntBASIC5.79□□□□□ -1.48
SOX4Q06945 BX323046.1-201ENST00000610145 535 ntBASIC5.79□□□□□ -1.48
SOX4Q06945 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
SOX4Q06945 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SOX4Q06945 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX4Q06945 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.79□□□□□ -1.48
SOX4Q06945 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
SOX4Q06945 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
SOX4Q06945 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
SOX4Q06945 USP9YP4-201ENST00000424401 1745 ntBASIC5.79□□□□□ -1.48
SOX4Q06945 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SOX4Q06945 AC004076.2-201ENST00000620532 3323 ntBASIC5.79□□□□□ -1.48
SOX4Q06945 AC003973.3-201ENST00000624863 2822 ntBASIC5.79□□□□□ -1.48
SOX4Q06945 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.79□□□□□ -1.48
SOX4Q06945 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
SOX4Q06945 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.78□□□□□ -1.48
SOX4Q06945 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC5.78□□□□□ -1.48
SOX4Q06945 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SOX4Q06945 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SOX4Q06945 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SOX4Q06945 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SOX4Q06945 RNU6-1097P-201ENST00000363586 107 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 RNU4-1-201ENST00000363925 141 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 RNU1-106P-201ENST00000384382 164 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SOX4Q06945 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SOX4Q06945 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.78□□□□□ -1.48
SOX4Q06945 RNA5SP487-201ENST00000410186 122 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 AC078974.1-201ENST00000411597 223 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SOX4Q06945 AC006020.1-201ENST00000420179 1854 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 BEND7P1-201ENST00000422058 457 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.78□□□□□ -1.48
SOX4Q06945 RPL23AP30-201ENST00000432419 501 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.78□□□□□ -1.48
SOX4Q06945 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.78□□□□□ -1.48
SOX4Q06945 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC5.78□□□□□ -1.48
SOX4Q06945 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC5.78□□□□□ -1.48
SOX4Q06945 RNU7-63P-201ENST00000459054 62 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 MTCO2P29-201ENST00000465212 189 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 RN7SL188P-201ENST00000469842 285 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 MTND4P17-201ENST00000470444 350 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 RPL32P9-201ENST00000487963 407 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC5.78□□□□□ -1.48
SOX4Q06945 TMEM248P1-201ENST00000510579 951 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 AC091912.1-201ENST00000511351 248 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 RNU6-202P-201ENST00000515998 96 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.78□□□□□ -1.48
SOX4Q06945 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC5.78□□□□□ -1.48
SOX4Q06945 AP003072.2-201ENST00000527756 676 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SOX4Q06945 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC5.78□□□□□ -1.48
SOX4Q06945 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC5.78□□□□□ -1.48
SOX4Q06945 SULT1C2P1-202ENST00000562418 459 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 AC005341.1-201ENST00000571086 708 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 MIR3691-201ENST00000578066 90 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC5.78□□□□□ -1.48
SOX4Q06945 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 ACTR3BP1-201ENST00000605584 1247 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 AC011373.1-201ENST00000607270 237 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 AC091953.2-201ENST00000623979 160 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.78□□□□□ -1.48
SOX4Q06945 CDRT1-208ENST00000630868 794 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 AL137141.1-201ENST00000624622 4836 ntBASIC5.78□□□□□ -1.48
SOX4Q06945 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC5.78□□□□□ -1.48
SOX4Q06945 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
SOX4Q06945 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.77□□□□□ -1.48
SOX4Q06945 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
SOX4Q06945 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.77□□□□□ -1.49
SOX4Q06945 AC007823.1-201ENST00000569932 1566 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
SOX4Q06945 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SOX4Q06945 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
SOX4Q06945 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.77□□□□□ -1.49
SOX4Q06945 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
SOX4Q06945 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
SOX4Q06945 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SOX4Q06945 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
SOX4Q06945 RPL23AP57-201ENST00000332361 466 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SOX4Q06945 Y_RNA.255-201ENST00000364581 97 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SOX4Q06945 RNU6-639P-201ENST00000384074 107 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 Y_RNA.445-201ENST00000384168 102 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 RNU6-196P-201ENST00000384315 107 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 SNORA70-201ENST00000384436 135 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 SNORD56.6-201ENST00000384569 71 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 RNU6-1105P-201ENST00000384774 107 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 CD3D-202ENST00000392884 476 ntTSL 2 BASIC5.77□□□□□ -1.49
SOX4Q06945 AL356057.3-201ENST00000402607 340 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 AL136131.1-201ENST00000406079 803 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 RNU2-39P-201ENST00000410604 198 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 RGS17P1-201ENST00000423358 553 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC5.77□□□□□ -1.49
SOX4Q06945 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
SOX4Q06945 GPR143P-201ENST00000434155 205 ntBASIC5.77□□□□□ -1.49
SOX4Q06945 AC119618.1-201ENST00000434191 222 ntBASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms