Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC008507.1-201ENST00000587506 734 ntBASIC4.84□□□□□ -1.63
CUX1P39880 RMST_8.1-201ENST00000610287 165 ntBASIC4.84□□□□□ -1.63
CUX1P39880 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.84□□□□□ -1.63
CUX1P39880 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CUX1P39880 RAB6C-AS1-202ENST00000433431 123 ntBASIC4.83□□□□□ -1.64
CUX1P39880 AP000936.2-201ENST00000447151 681 ntBASIC4.83□□□□□ -1.64
CUX1P39880 HSPE1P6-201ENST00000479457 291 ntBASIC4.83□□□□□ -1.64
CUX1P39880 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.83□□□□□ -1.64
CUX1P39880 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.83□□□□□ -1.64
CUX1P39880 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.83□□□□□ -1.64
CUX1P39880 AHI1-217ENST00000534469 680 ntTSL 3 BASIC4.83□□□□□ -1.64
CUX1P39880 MIR4425-201ENST00000580572 84 ntBASIC4.83□□□□□ -1.64
CUX1P39880 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CUX1P39880 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CUX1P39880 RPL7P26-201ENST00000333817 754 ntBASIC4.82□□□□□ -1.64
CUX1P39880 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.82□□□□□ -1.64
CUX1P39880 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CUX1P39880 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.82□□□□□ -1.64
CUX1P39880 RPL29P29-201ENST00000448725 423 ntBASIC4.82□□□□□ -1.64
CUX1P39880 MIR2114-201ENST00000516645 80 ntBASIC4.82□□□□□ -1.64
CUX1P39880 MIR4435-1-201ENST00000582552 80 ntBASIC4.82□□□□□ -1.64
CUX1P39880 AC079089.3-201ENST00000603094 673 ntBASIC4.82□□□□□ -1.64
CUX1P39880 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC4.82□□□□□ -1.64
CUX1P39880 AC087241.4-201ENST00000612441 480 ntBASIC4.82□□□□□ -1.64
CUX1P39880 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CUX1P39880 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CUX1P39880 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CUX1P39880 MAPK10-362ENST00000641864 4484 ntBASIC4.82□□□□□ -1.64
CUX1P39880 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CUX1P39880 RHEBP3-201ENST00000411920 351 ntBASIC4.82□□□□□ -1.64
CUX1P39880 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC4.82□□□□□ -1.64
CUX1P39880 AL513328.1-201ENST00000446460 224 ntBASIC4.82□□□□□ -1.64
CUX1P39880 AL121877.1-201ENST00000453704 622 ntBASIC4.82□□□□□ -1.64
CUX1P39880 RPS17P11-201ENST00000474297 293 ntBASIC4.82□□□□□ -1.64
CUX1P39880 OR5H3P-201ENST00000502817 919 ntBASIC4.82□□□□□ -1.64
CUX1P39880 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.82□□□□□ -1.64
CUX1P39880 AC007954.1-201ENST00000554198 494 ntBASIC4.82□□□□□ -1.64
CUX1P39880 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC4.82□□□□□ -1.64
CUX1P39880 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
CUX1P39880 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CUX1P39880 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
CUX1P39880 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.81□□□□□ -1.64
CUX1P39880 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.81□□□□□ -1.64
CUX1P39880 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.81□□□□□ -1.64
CUX1P39880 AL139039.1-201ENST00000401900 692 ntBASIC4.81□□□□□ -1.64
CUX1P39880 AL138827.1-201ENST00000402666 306 ntBASIC4.81□□□□□ -1.64
CUX1P39880 RPL30P2-201ENST00000414021 291 ntBASIC4.81□□□□□ -1.64
CUX1P39880 AL162389.1-201ENST00000449233 177 ntBASIC4.81□□□□□ -1.64
CUX1P39880 APOA2-205ENST00000468465 421 ntTSL 2 BASIC4.81□□□□□ -1.64
CUX1P39880 AC017037.2-201ENST00000513850 890 ntBASIC4.81□□□□□ -1.64
CUX1P39880 AC104027.1-201ENST00000521887 300 ntBASIC4.81□□□□□ -1.64
CUX1P39880 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CUX1P39880 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC4.81□□□□□ -1.64
CUX1P39880 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.81□□□□□ -1.64
CUX1P39880 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.81□□□□□ -1.64
CUX1P39880 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC4.81□□□□□ -1.64
CUX1P39880 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CUX1P39880 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CUX1P39880 AC015813.6-201ENST00000624409 5808 ntBASIC4.8□□□□□ -1.64
CUX1P39880 AL049555.1-201ENST00000562834 1933 ntBASIC4.8□□□□□ -1.64
CUX1P39880 RPL7L1P1-201ENST00000448259 785 ntBASIC4.8□□□□□ -1.64
CUX1P39880 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.8□□□□□ -1.64
CUX1P39880 RNA5SP217-201ENST00000515959 91 ntBASIC4.8□□□□□ -1.64
CUX1P39880 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.8□□□□□ -1.64
CUX1P39880 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.8□□□□□ -1.64
CUX1P39880 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.8□□□□□ -1.64
CUX1P39880 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.8□□□□□ -1.64
CUX1P39880 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
CUX1P39880 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CUX1P39880 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.79□□□□□ -1.64
CUX1P39880 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.79□□□□□ -1.64
CUX1P39880 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC4.79□□□□□ -1.64
CUX1P39880 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC4.79□□□□□ -1.64
CUX1P39880 ST13P14-201ENST00000474095 734 ntBASIC4.79□□□□□ -1.64
CUX1P39880 UBL5P3-201ENST00000475112 231 ntBASIC4.79□□□□□ -1.64
CUX1P39880 AC117522.3-201ENST00000507974 584 ntBASIC4.79□□□□□ -1.64
CUX1P39880 AC107016.2-201ENST00000547968 190 ntBASIC4.79□□□□□ -1.64
CUX1P39880 AL590808.1-201ENST00000618696 141 ntBASIC4.79□□□□□ -1.64
CUX1P39880 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
CUX1P39880 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4.78□□□□□ -1.64
CUX1P39880 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
CUX1P39880 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CUX1P39880 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CUX1P39880 Z98941.1-201ENST00000407764 100 ntBASIC4.78□□□□□ -1.64
CUX1P39880 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC4.78□□□□□ -1.64
CUX1P39880 FTH1P1-201ENST00000437933 532 ntBASIC4.78□□□□□ -1.64
CUX1P39880 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC4.78□□□□□ -1.64
CUX1P39880 AC113430.1-201ENST00000506872 718 ntBASIC4.78□□□□□ -1.64
CUX1P39880 Z82195.1-201ENST00000604558 398 ntBASIC4.78□□□□□ -1.64
CUX1P39880 ASNSP3-201ENST00000451989 1306 ntBASIC4.78□□□□□ -1.64
CUX1P39880 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CUX1P39880 LINC01355-201ENST00000566551 5444 ntBASIC4.78□□□□□ -1.64
CUX1P39880 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC4.78□□□□□ -1.64
CUX1P39880 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
CUX1P39880 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
CUX1P39880 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CUX1P39880 AC009963.1-201ENST00000417265 157 ntBASIC4.77□□□□□ -1.65
CUX1P39880 HMGB3P6-201ENST00000444896 598 ntBASIC4.77□□□□□ -1.65
CUX1P39880 FDX1P2-201ENST00000450769 375 ntBASIC4.77□□□□□ -1.65
CUX1P39880 AC008549.1-201ENST00000512900 643 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 137.2 ms