Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Gm3272-201ENSMUST00000181181 1229 ntBASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Gm27741-201ENSMUST00000185060 237 ntBASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Gm29518-201ENSMUST00000190858 372 ntBASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Gm17808-201ENSMUST00000200859 894 ntBASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 AC154471.1-201ENSMUST00000224418 436 ntBASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Gm10566-201ENSMUST00000086739 996 ntBASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Gm11841-201ENSMUST00000117060 1963 ntBASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Cdc40Q9DC48 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdc40Q9DC48 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cdc40Q9DC48 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cdc40Q9DC48 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC15.27■□□□□ 0.04
Cdc40Q9DC48 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cdc40Q9DC48 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cdc40Q9DC48 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cdc40Q9DC48 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Cdc40Q9DC48 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cdc40Q9DC48 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cdc40Q9DC48 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cdc40Q9DC48 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cdc40Q9DC48 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cdc40Q9DC48 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.04
Cdc40Q9DC48 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdc40Q9DC48 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdc40Q9DC48 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdc40Q9DC48 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdc40Q9DC48 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdc40Q9DC48 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdc40Q9DC48 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdc40Q9DC48 AL590614.2-201ENSMUST00000225374 1937 ntBASIC15.27■□□□□ 0.03
Cdc40Q9DC48 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdc40Q9DC48 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cdc40Q9DC48 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
Cdc40Q9DC48 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cdc40Q9DC48 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms