Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm3928-201ENSMUST00000121141 1307 ntBASIC17.34■□□□□ 0.37
Clp1Q99LI9 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 AC154621.1-201ENSMUST00000226155 1119 ntBASIC17.34■□□□□ 0.37
Clp1Q99LI9 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Clp1Q99LI9 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Clp1Q99LI9 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC17.33■□□□□ 0.37
Clp1Q99LI9 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Clp1Q99LI9 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.33■□□□□ 0.37
Clp1Q99LI9 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Clp1Q99LI9 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Clp1Q99LI9 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC17.33■□□□□ 0.36
Clp1Q99LI9 Gm25406-201ENSMUST00000157599 105 ntBASIC17.33■□□□□ 0.36
Clp1Q99LI9 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.33■□□□□ 0.36
Clp1Q99LI9 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Clp1Q99LI9 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Clp1Q99LI9 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Clp1Q99LI9 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Clp1Q99LI9 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Clp1Q99LI9 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Clp1Q99LI9 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Clp1Q99LI9 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Clp1Q99LI9 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC17.32■□□□□ 0.36
Clp1Q99LI9 AC090659.1-201ENSMUST00000224334 768 ntBASIC17.32■□□□□ 0.36
Clp1Q99LI9 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Gm5953-201ENSMUST00000220644 2616 ntBASIC17.32■□□□□ 0.36
Clp1Q99LI9 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Clp1Q99LI9 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Gm43808-201ENSMUST00000202534 2065 ntBASIC17.31■□□□□ 0.36
Clp1Q99LI9 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Clp1Q99LI9 Fam105a-203ENSMUST00000226170 3043 ntBASIC17.31■□□□□ 0.36
Clp1Q99LI9 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Clp1Q99LI9 AC122901.1-201ENSMUST00000214203 1790 ntBASIC17.3■□□□□ 0.36
Clp1Q99LI9 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Gm36967-201ENSMUST00000193814 266 ntBASIC17.3■□□□□ 0.36
Clp1Q99LI9 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Gm10175-201ENSMUST00000086013 645 ntBASIC17.3■□□□□ 0.36
Clp1Q99LI9 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Clp1Q99LI9 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Clp1Q99LI9 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Clp1Q99LI9 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Clp1Q99LI9 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Clp1Q99LI9 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms