Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Vps53Q8CCB4 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Vps53Q8CCB4 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps53Q8CCB4 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC19.13■□□□□ 0.65
Vps53Q8CCB4 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Vps53Q8CCB4 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Vps53Q8CCB4 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps53Q8CCB4 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Vps53Q8CCB4 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps53Q8CCB4 Gm15743-202ENSMUST00000182690 1901 ntBASIC19.13■□□□□ 0.65
Vps53Q8CCB4 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vps53Q8CCB4 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.13■□□□□ 0.65
Vps53Q8CCB4 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Vps53Q8CCB4 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Gm8839-201ENSMUST00000121279 1645 ntBASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 AC120002.2-201ENSMUST00000220205 773 ntBASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Gm43548-201ENSMUST00000197139 2353 ntBASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vps53Q8CCB4 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Gm7153-201ENSMUST00000117092 455 ntBASIC19.11■□□□□ 0.65
Vps53Q8CCB4 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Gm7461-201ENSMUST00000058918 827 ntBASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Vps53Q8CCB4 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Ptprs-211ENSMUST00000223859 5588 ntBASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Vps53Q8CCB4 AL590614.2-201ENSMUST00000225374 1937 ntBASIC19.1■□□□□ 0.65
Vps53Q8CCB4 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 AC107711.5-202ENSMUST00000226429 702 ntBASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms