Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Gm26039-201ENSMUST00000158152 144 ntBASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sh3rf3Q8C120 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Gm10231-201ENSMUST00000181584 441 ntBASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Mir7071-201ENSMUST00000184847 69 ntBASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Gm44450-201ENSMUST00000199528 114 ntBASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Gm10175-202ENSMUST00000208752 441 ntBASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Sh3rf3Q8C120 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Sh3rf3Q8C120 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Sh3rf3Q8C120 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Sh3rf3Q8C120 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Gm18115-201ENSMUST00000221209 621 ntBASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Sh3rf3Q8C120 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf3Q8C120 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf3Q8C120 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf3Q8C120 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Sh3rf3Q8C120 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf3Q8C120 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Sh3rf3Q8C120 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.12■□□□□ 0.33
Sh3rf3Q8C120 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms