Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
Trim47Q8C0E3 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim47Q8C0E3 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 AC124569.2-201ENSMUST00000225998 818 ntBASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC18.19■□□□□ 0.5
Trim47Q8C0E3 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 AC159205.3-201ENSMUST00000224614 874 ntBASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim47Q8C0E3 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 AC153794.1-201ENSMUST00000169148 126 ntBASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Gm17971-201ENSMUST00000190239 806 ntBASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Gm9889-202ENSMUST00000206983 1577 ntBASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim47Q8C0E3 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC18.16■□□□□ 0.5
Trim47Q8C0E3 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms