Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Gm13418-201ENSMUST00000119097 944 ntBASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Usp40Q8BWR4 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Gm6598-201ENSMUST00000202719 2615 ntBASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Gm12350-201ENSMUST00000121208 462 ntBASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Gm36858-201ENSMUST00000194501 2391 ntBASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Gm43294-201ENSMUST00000202850 2490 ntBASIC22.5■■□□□ 1.19
Usp40Q8BWR4 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Usp40Q8BWR4 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Usp40Q8BWR4 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Usp40Q8BWR4 Gm32996-201ENSMUST00000199828 1447 ntBASIC22.49■■□□□ 1.19
Usp40Q8BWR4 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Usp40Q8BWR4 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Usp40Q8BWR4 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
Usp40Q8BWR4 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Usp40Q8BWR4 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Usp40Q8BWR4 Gm18206-201ENSMUST00000207027 926 ntBASIC22.49■■□□□ 1.19
Usp40Q8BWR4 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Usp40Q8BWR4 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC22.49■■□□□ 1.19
Usp40Q8BWR4 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC22.49■■□□□ 1.19
Usp40Q8BWR4 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Usp40Q8BWR4 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC22.49■■□□□ 1.19
Usp40Q8BWR4 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Gm25990-201ENSMUST00000102440 86 ntBASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Gm4535-201ENSMUST00000182274 558 ntBASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Gm10355-201ENSMUST00000097146 517 ntBASIC22.48■■□□□ 1.19
Usp40Q8BWR4 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Usp40Q8BWR4 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 AC132265.1-201ENSMUST00000219233 1665 ntBASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Gm4459-201ENSMUST00000118750 468 ntBASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Gm1401-201ENSMUST00000122048 772 ntBASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Gm6858-201ENSMUST00000208582 1468 ntBASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC22.47■■□□□ 1.19
Usp40Q8BWR4 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
Usp40Q8BWR4 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Usp40Q8BWR4 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Usp40Q8BWR4 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
Usp40Q8BWR4 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Usp40Q8BWR4 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Usp40Q8BWR4 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Usp40Q8BWR4 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
Usp40Q8BWR4 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
Usp40Q8BWR4 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC22.46■■□□□ 1.19
Usp40Q8BWR4 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC22.46■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms