Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC18■□□□□ 0.47
Cln3Q61124 Gm13036-201ENSMUST00000117799 748 ntBASIC18■□□□□ 0.47
Cln3Q61124 Gm12260-201ENSMUST00000122447 411 ntBASIC18■□□□□ 0.47
Cln3Q61124 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cln3Q61124 Gm8655-201ENSMUST00000221159 852 ntBASIC18■□□□□ 0.47
Cln3Q61124 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC18■□□□□ 0.47
Cln3Q61124 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Cln3Q61124 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Cln3Q61124 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18■□□□□ 0.47
Cln3Q61124 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Cln3Q61124 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC18■□□□□ 0.47
Cln3Q61124 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Cln3Q61124 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Cln3Q61124 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cln3Q61124 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Cln3Q61124 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC17.99■□□□□ 0.47
Cln3Q61124 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Cln3Q61124 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC17.99■□□□□ 0.47
Cln3Q61124 Gm25406-201ENSMUST00000157599 105 ntBASIC17.99■□□□□ 0.47
Cln3Q61124 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
Cln3Q61124 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.99■□□□□ 0.47
Cln3Q61124 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cln3Q61124 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC17.99■□□□□ 0.47
Cln3Q61124 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cln3Q61124 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cln3Q61124 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
Cln3Q61124 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cln3Q61124 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Cln3Q61124 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC17.99■□□□□ 0.47
Cln3Q61124 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.98■□□□□ 0.47
Cln3Q61124 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cln3Q61124 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cln3Q61124 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC17.98■□□□□ 0.47
Cln3Q61124 Gm2213-201ENSMUST00000197485 688 ntBASIC17.98■□□□□ 0.47
Cln3Q61124 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cln3Q61124 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC17.98■□□□□ 0.47
Cln3Q61124 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Cln3Q61124 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cln3Q61124 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Cln3Q61124 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cln3Q61124 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Cln3Q61124 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.98■□□□□ 0.47
Cln3Q61124 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cln3Q61124 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cln3Q61124 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Cln3Q61124 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cln3Q61124 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Cln3Q61124 Gm37500-201ENSMUST00000192059 1443 ntBASIC17.98■□□□□ 0.47
Cln3Q61124 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Cln3Q61124 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Cln3Q61124 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cln3Q61124 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cln3Q61124 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cln3Q61124 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Cln3Q61124 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cln3Q61124 Gm14494-201ENSMUST00000118786 435 ntBASIC17.97■□□□□ 0.47
Cln3Q61124 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Cln3Q61124 Gm27702-201ENSMUST00000184512 56 ntBASIC17.97■□□□□ 0.47
Cln3Q61124 Gm43935-201ENSMUST00000203569 1050 ntBASIC17.97■□□□□ 0.47
Cln3Q61124 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cln3Q61124 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
Cln3Q61124 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC17.97■□□□□ 0.47
Cln3Q61124 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Cln3Q61124 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cln3Q61124 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.97■□□□□ 0.47
Cln3Q61124 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC17.97■□□□□ 0.47
Cln3Q61124 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Cln3Q61124 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cln3Q61124 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cln3Q61124 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC17.96■□□□□ 0.47
Cln3Q61124 Gm14140-201ENSMUST00000119999 995 ntBASIC17.96■□□□□ 0.47
Cln3Q61124 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC17.96■□□□□ 0.47
Cln3Q61124 Gm9172-201ENSMUST00000212092 954 ntBASIC17.96■□□□□ 0.47
Cln3Q61124 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.96■□□□□ 0.47
Cln3Q61124 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cln3Q61124 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cln3Q61124 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cln3Q61124 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Cln3Q61124 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Cln3Q61124 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Cln3Q61124 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Cln3Q61124 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
Cln3Q61124 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Cln3Q61124 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Cln3Q61124 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cln3Q61124 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cln3Q61124 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cln3Q61124 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cln3Q61124 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cln3Q61124 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.95■□□□□ 0.46
Cln3Q61124 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cln3Q61124 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cln3Q61124 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC17.95■□□□□ 0.46
Cln3Q61124 CT943659.1-201ENSMUST00000215459 326 ntBASIC17.95■□□□□ 0.46
Cln3Q61124 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cln3Q61124 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Cln3Q61124 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Cln3Q61124 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cln3Q61124 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cln3Q61124 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms