Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
Upf3bQ3ULL6 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Gm26596-201ENSMUST00000180464 2655 ntBASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Gm7977-201ENSMUST00000193787 748 ntBASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3bQ3ULL6 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Mir770-201ENSMUST00000103252 94 ntBASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3bQ3ULL6 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Gm28265-201ENSMUST00000188201 2319 ntBASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3bQ3ULL6 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3bQ3ULL6 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3bQ3ULL6 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3bQ3ULL6 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3bQ3ULL6 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
Upf3bQ3ULL6 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3bQ3ULL6 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3bQ3ULL6 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Gm6623-201ENSMUST00000173570 544 ntBASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Upf3bQ3ULL6 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms