Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col8a1Q00780 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col8a1Q00780 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col8a1Q00780 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Col8a1Q00780 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col8a1Q00780 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC14.02□□□□□ -0.17
Col8a1Q00780 Gm19439-201ENSMUST00000198195 2273 ntBASIC14.02□□□□□ -0.17
Col8a1Q00780 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col8a1Q00780 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Col8a1Q00780 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col8a1Q00780 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col8a1Q00780 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col8a1Q00780 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Col8a1Q00780 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col8a1Q00780 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Col8a1Q00780 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC14.01□□□□□ -0.17
Col8a1Q00780 Gm26308-201ENSMUST00000157768 69 ntBASIC14.01□□□□□ -0.17
Col8a1Q00780 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC14.01□□□□□ -0.17
Col8a1Q00780 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC14.01□□□□□ -0.17
Col8a1Q00780 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Col8a1Q00780 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Col8a1Q00780 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Col8a1Q00780 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col8a1Q00780 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC14□□□□□ -0.17
Col8a1Q00780 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Col8a1Q00780 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Gm43702-201ENSMUST00000198772 2546 ntBASIC14□□□□□ -0.17
Col8a1Q00780 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Col8a1Q00780 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
Col8a1Q00780 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC14□□□□□ -0.17
Col8a1Q00780 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Col8a1Q00780 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC14□□□□□ -0.17
Col8a1Q00780 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Col8a1Q00780 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Bloc1s5-203ENSMUST00000224902 612 ntBASIC14□□□□□ -0.17
Col8a1Q00780 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
Col8a1Q00780 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC14□□□□□ -0.17
Col8a1Q00780 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Col8a1Q00780 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Col8a1Q00780 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col8a1Q00780 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC13.99□□□□□ -0.17
Col8a1Q00780 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
Col8a1Q00780 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Gm13418-201ENSMUST00000119097 944 ntBASIC13.99□□□□□ -0.17
Col8a1Q00780 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
Col8a1Q00780 Gm6089-201ENSMUST00000197666 938 ntBASIC13.99□□□□□ -0.17
Col8a1Q00780 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC13.99□□□□□ -0.17
Col8a1Q00780 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Col8a1Q00780 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms