Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Shmt1P50431 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC17.38■□□□□ 0.37
Shmt1P50431 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Shmt1P50431 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Shmt1P50431 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Shmt1P50431 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.38■□□□□ 0.37
Shmt1P50431 Gm18669-201ENSMUST00000216049 778 ntBASIC17.38■□□□□ 0.37
Shmt1P50431 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Shmt1P50431 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Shmt1P50431 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Shmt1P50431 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Shmt1P50431 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Shmt1P50431 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Shmt1P50431 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
Shmt1P50431 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Shmt1P50431 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC17.37■□□□□ 0.37
Shmt1P50431 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
Shmt1P50431 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Shmt1P50431 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
Shmt1P50431 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Shmt1P50431 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Gm13216-201ENSMUST00000117145 591 ntBASIC17.36■□□□□ 0.37
Shmt1P50431 Gm10052-201ENSMUST00000168019 960 ntBASIC17.36■□□□□ 0.37
Shmt1P50431 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Gm7729-201ENSMUST00000050143 801 ntBASIC17.36■□□□□ 0.37
Shmt1P50431 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.36■□□□□ 0.37
Shmt1P50431 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC17.36■□□□□ 0.37
Shmt1P50431 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Shmt1P50431 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Shmt1P50431 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC17.35■□□□□ 0.37
Shmt1P50431 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC17.35■□□□□ 0.37
Shmt1P50431 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.35■□□□□ 0.37
Shmt1P50431 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC17.35■□□□□ 0.37
Shmt1P50431 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.35■□□□□ 0.37
Shmt1P50431 Gm44430-201ENSMUST00000203376 995 ntBASIC17.35■□□□□ 0.37
Shmt1P50431 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Shmt1P50431 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Shmt1P50431 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Shmt1P50431 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Shmt1P50431 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
Shmt1P50431 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.34■□□□□ 0.37
Shmt1P50431 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Shmt1P50431 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Shmt1P50431 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Shmt1P50431 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Shmt1P50431 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 60.9 ms