Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col2a1P28481 AC154527.4-201ENSMUST00000224364 1667 ntBASIC18.59■□□□□ 0.57
Col2a1P28481 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col2a1P28481 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Col2a1P28481 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col2a1P28481 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC18.58■□□□□ 0.57
Col2a1P28481 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col2a1P28481 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Col2a1P28481 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC18.58■□□□□ 0.57
Col2a1P28481 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC18.58■□□□□ 0.57
Col2a1P28481 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Col2a1P28481 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col2a1P28481 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col2a1P28481 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col2a1P28481 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Col2a1P28481 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col2a1P28481 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col2a1P28481 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
Col2a1P28481 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC18.58■□□□□ 0.56
Col2a1P28481 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC18.57■□□□□ 0.56
Col2a1P28481 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col2a1P28481 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Col2a1P28481 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Col2a1P28481 Gm43294-201ENSMUST00000202850 2490 ntBASIC18.57■□□□□ 0.56
Col2a1P28481 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col2a1P28481 Gm13036-201ENSMUST00000117799 748 ntBASIC18.57■□□□□ 0.56
Col2a1P28481 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col2a1P28481 Gm27646-201ENSMUST00000183989 110 ntBASIC18.57■□□□□ 0.56
Col2a1P28481 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col2a1P28481 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC18.57■□□□□ 0.56
Col2a1P28481 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC18.57■□□□□ 0.56
Col2a1P28481 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC18.57■□□□□ 0.56
Col2a1P28481 Gm18622-201ENSMUST00000219361 595 ntBASIC18.57■□□□□ 0.56
Col2a1P28481 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col2a1P28481 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col2a1P28481 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Col2a1P28481 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC18.56■□□□□ 0.56
Col2a1P28481 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col2a1P28481 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col2a1P28481 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col2a1P28481 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col2a1P28481 Gm11764-201ENSMUST00000120221 623 ntBASIC18.56■□□□□ 0.56
Col2a1P28481 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC18.56■□□□□ 0.56
Col2a1P28481 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC18.56■□□□□ 0.56
Col2a1P28481 Psmb5-202ENSMUST00000227257 622 ntBASIC18.56■□□□□ 0.56
Col2a1P28481 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col2a1P28481 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col2a1P28481 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.56■□□□□ 0.56
Col2a1P28481 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Gm37500-201ENSMUST00000192059 1443 ntBASIC18.55■□□□□ 0.56
Col2a1P28481 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC18.55■□□□□ 0.56
Col2a1P28481 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC18.55■□□□□ 0.56
Col2a1P28481 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC18.55■□□□□ 0.56
Col2a1P28481 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC18.55■□□□□ 0.56
Col2a1P28481 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
Col2a1P28481 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col2a1P28481 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col2a1P28481 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col2a1P28481 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col2a1P28481 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col2a1P28481 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col2a1P28481 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC18.54■□□□□ 0.56
Col2a1P28481 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Col2a1P28481 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col2a1P28481 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col2a1P28481 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col2a1P28481 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col2a1P28481 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col2a1P28481 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col2a1P28481 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col2a1P28481 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC18.54■□□□□ 0.56
Col2a1P28481 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Col2a1P28481 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col2a1P28481 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col2a1P28481 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC18.53■□□□□ 0.56
Col2a1P28481 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col2a1P28481 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col2a1P28481 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col2a1P28481 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col2a1P28481 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col2a1P28481 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col2a1P28481 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Col2a1P28481 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC18.53■□□□□ 0.56
Col2a1P28481 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col2a1P28481 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.53■□□□□ 0.56
Col2a1P28481 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col2a1P28481 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC18.52■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms