Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Gm3928-201ENSMUST00000121141 1307 ntBASIC20.17■□□□□ 0.82
Col4a1P02463 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
Col4a1P02463 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC20.17■□□□□ 0.82
Col4a1P02463 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col4a1P02463 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col4a1P02463 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Col4a1P02463 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC20.17■□□□□ 0.82
Col4a1P02463 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Col4a1P02463 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Col4a1P02463 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col4a1P02463 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col4a1P02463 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Col4a1P02463 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col4a1P02463 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Col4a1P02463 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col4a1P02463 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Col4a1P02463 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC20.16■□□□□ 0.82
Col4a1P02463 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Col4a1P02463 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC20.16■□□□□ 0.82
Col4a1P02463 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Col4a1P02463 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Col4a1P02463 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Col4a1P02463 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col4a1P02463 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col4a1P02463 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col4a1P02463 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
Col4a1P02463 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col4a1P02463 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col4a1P02463 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col4a1P02463 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col4a1P02463 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col4a1P02463 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Col4a1P02463 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col4a1P02463 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col4a1P02463 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC20.15■□□□□ 0.82
Col4a1P02463 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC20.15■□□□□ 0.82
Col4a1P02463 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col4a1P02463 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col4a1P02463 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Col4a1P02463 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col4a1P02463 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col4a1P02463 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC20.14■□□□□ 0.81
Col4a1P02463 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col4a1P02463 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Col4a1P02463 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Col4a1P02463 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col4a1P02463 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Col4a1P02463 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col4a1P02463 Gm14822-201ENSMUST00000122247 291 ntBASIC20.13■□□□□ 0.81
Col4a1P02463 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col4a1P02463 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col4a1P02463 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col4a1P02463 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col4a1P02463 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC20.13■□□□□ 0.81
Col4a1P02463 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col4a1P02463 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col4a1P02463 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC20.13■□□□□ 0.81
Col4a1P02463 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col4a1P02463 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC20.13■□□□□ 0.81
Col4a1P02463 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Col4a1P02463 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col4a1P02463 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC20.12■□□□□ 0.81
Col4a1P02463 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col4a1P02463 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col4a1P02463 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col4a1P02463 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col4a1P02463 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col4a1P02463 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC20.12■□□□□ 0.81
Col4a1P02463 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC20.12■□□□□ 0.81
Col4a1P02463 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC20.12■□□□□ 0.81
Col4a1P02463 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC20.12■□□□□ 0.81
Col4a1P02463 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col4a1P02463 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col4a1P02463 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Col4a1P02463 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col4a1P02463 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col4a1P02463 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col4a1P02463 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col4a1P02463 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC20.11■□□□□ 0.81
Col4a1P02463 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col4a1P02463 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col4a1P02463 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col4a1P02463 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col4a1P02463 CT943659.1-201ENSMUST00000215459 326 ntBASIC20.11■□□□□ 0.81
Col4a1P02463 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col4a1P02463 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Col4a1P02463 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC20.11■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 65.9 ms