Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC14.79□□□□□ -0.04
Col5a1O88207 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 AC084391.1-201ENSMUST00000200651 141 ntBASIC14.79□□□□□ -0.04
Col5a1O88207 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC14.79□□□□□ -0.04
Col5a1O88207 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC14.79□□□□□ -0.04
Col5a1O88207 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC14.79□□□□□ -0.04
Col5a1O88207 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Col5a1O88207 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC14.79□□□□□ -0.04
Col5a1O88207 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Col5a1O88207 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Col5a1O88207 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Gm14701-201ENSMUST00000117156 348 ntBASIC14.78□□□□□ -0.04
Col5a1O88207 H2af-ps-201ENSMUST00000119066 295 ntBASIC14.78□□□□□ -0.04
Col5a1O88207 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC14.78□□□□□ -0.04
Col5a1O88207 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.78□□□□□ -0.04
Col5a1O88207 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC14.78□□□□□ -0.04
Col5a1O88207 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
Col5a1O88207 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Col5a1O88207 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Gm9889-202ENSMUST00000206983 1577 ntBASIC14.78□□□□□ -0.04
Col5a1O88207 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Gm6858-201ENSMUST00000208582 1468 ntBASIC14.78□□□□□ -0.04
Col5a1O88207 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC14.78□□□□□ -0.04
Col5a1O88207 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC14.78□□□□□ -0.04
Col5a1O88207 Mir6956-201ENSMUST00000183598 62 ntBASIC14.78□□□□□ -0.04
Col5a1O88207 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC14.78□□□□□ -0.04
Col5a1O88207 Gm9172-201ENSMUST00000212092 954 ntBASIC14.78□□□□□ -0.04
Col5a1O88207 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC14.78□□□□□ -0.04
Col5a1O88207 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col5a1O88207 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Col5a1O88207 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col5a1O88207 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col5a1O88207 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col5a1O88207 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC14.77□□□□□ -0.05
Col5a1O88207 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC14.77□□□□□ -0.05
Col5a1O88207 AC154757.1-201ENSMUST00000228289 336 ntBASIC14.77□□□□□ -0.05
Col5a1O88207 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col5a1O88207 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Col5a1O88207 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col5a1O88207 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC14.77□□□□□ -0.05
Col5a1O88207 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col5a1O88207 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col5a1O88207 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col5a1O88207 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC14.76□□□□□ -0.05
Col5a1O88207 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC14.76□□□□□ -0.05
Col5a1O88207 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC14.76□□□□□ -0.05
Col5a1O88207 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.76□□□□□ -0.05
Col5a1O88207 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Col5a1O88207 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
Col5a1O88207 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col5a1O88207 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms