Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Nr1i3O35627 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Nr1i3O35627 Gm29707-201ENSMUST00000196325 491 ntBASIC17.69■□□□□ 0.42
Nr1i3O35627 Gm30025-201ENSMUST00000218555 728 ntBASIC17.69■□□□□ 0.42
Nr1i3O35627 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nr1i3O35627 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nr1i3O35627 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Nr1i3O35627 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nr1i3O35627 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nr1i3O35627 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nr1i3O35627 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nr1i3O35627 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nr1i3O35627 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nr1i3O35627 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nr1i3O35627 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Nr1i3O35627 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nr1i3O35627 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Nr1i3O35627 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nr1i3O35627 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nr1i3O35627 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC17.68■□□□□ 0.42
Nr1i3O35627 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Nr1i3O35627 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nr1i3O35627 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nr1i3O35627 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Nr1i3O35627 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nr1i3O35627 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nr1i3O35627 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Nr1i3O35627 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.68■□□□□ 0.42
Nr1i3O35627 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Nr1i3O35627 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Nr1i3O35627 Gm19430-201ENSMUST00000193847 2137 ntBASIC17.68■□□□□ 0.42
Nr1i3O35627 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Nr1i3O35627 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Nr1i3O35627 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC17.67■□□□□ 0.42
Nr1i3O35627 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC17.67■□□□□ 0.42
Nr1i3O35627 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC17.67■□□□□ 0.42
Nr1i3O35627 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC17.67■□□□□ 0.42
Nr1i3O35627 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Nr1i3O35627 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.67■□□□□ 0.42
Nr1i3O35627 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Nr1i3O35627 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Nr1i3O35627 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC17.66■□□□□ 0.42
Nr1i3O35627 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.66■□□□□ 0.42
Nr1i3O35627 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Nr1i3O35627 Gm14464-201ENSMUST00000119658 1254 ntBASIC17.66■□□□□ 0.42
Nr1i3O35627 Gm7213-201ENSMUST00000215977 950 ntBASIC17.66■□□□□ 0.42
Nr1i3O35627 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
Nr1i3O35627 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC17.66■□□□□ 0.42
Nr1i3O35627 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Nr1i3O35627 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Nr1i3O35627 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Nr1i3O35627 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Nr1i3O35627 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Nr1i3O35627 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Nr1i3O35627 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Nr1i3O35627 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC17.65■□□□□ 0.42
Nr1i3O35627 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC17.65■□□□□ 0.42
Nr1i3O35627 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Nr1i3O35627 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Nr1i3O35627 Gm11336-201ENSMUST00000118168 334 ntBASIC17.65■□□□□ 0.42
Nr1i3O35627 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Nr1i3O35627 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Nr1i3O35627 Gm27011-201ENSMUST00000182352 972 ntBASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms