Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col6a3E9PWQ3 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC16.43■□□□□ 0.22
Col6a3E9PWQ3 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Col6a3E9PWQ3 Gm9889-202ENSMUST00000206983 1577 ntBASIC16.43■□□□□ 0.22
Col6a3E9PWQ3 Gm7619-201ENSMUST00000210649 1282 ntBASIC16.43■□□□□ 0.22
Col6a3E9PWQ3 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC16.43■□□□□ 0.22
Col6a3E9PWQ3 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Col6a3E9PWQ3 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Gm14719-201ENSMUST00000121891 340 ntBASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Mir8102-201ENSMUST00000184148 139 ntBASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC16.42■□□□□ 0.22
Col6a3E9PWQ3 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Gm44855-201ENSMUST00000205725 362 ntBASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Gm8655-201ENSMUST00000221159 852 ntBASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Gm11478-201ENSMUST00000117851 599 ntBASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Gm7507-201ENSMUST00000183053 1008 ntBASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Gm13453-201ENSMUST00000118708 357 ntBASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Col6a3E9PWQ3 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Gm9194-201ENSMUST00000220749 1447 ntBASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Gm5779-201ENSMUST00000218467 910 ntBASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col6a3E9PWQ3 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
Col6a3E9PWQ3 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 Gm6180-201ENSMUST00000065243 498 ntBASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col6a3E9PWQ3 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 AC147366.1-201ENSMUST00000227671 852 ntBASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Gm25287-201ENSMUST00000103846 110 ntBASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Gm22918-201ENSMUST00000103855 110 ntBASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Col6a3E9PWQ3 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms