Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MRPS35P3-201ENST00000603189 709 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC079587.1-201ENST00000603846 277 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC092954.1-201ENST00000609121 445 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 OR6R2P-201ENST00000609216 300 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 TUSC7.1-201ENST00000610969 165 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 MIR6864-201ENST00000617935 70 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 AL731566.2-201ENST00000618971 317 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC000123.2-201ENST00000623124 461 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC067852.7-201ENST00000623270 535 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC105074.1-201ENST00000623380 3095 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AP000776.1-201ENST00000530032 1663 ntBASIC3.67□□□□□ -1.82
NKX3-1Q99801 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
NKX3-1Q99801 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
NKX3-1Q99801 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-1Q99801 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AL031985.3-201ENST00000565390 2449 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-1Q99801 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-1Q99801 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-1Q99801 FAM133CP-201ENST00000332869 704 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 RNA5SP175-201ENST00000364275 119 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 RNU6-157P-201ENST00000383957 107 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 MIR129-1-201ENST00000384972 72 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 U3.22-201ENST00000391120 215 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 RSL24D1P4-201ENST00000400938 484 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 RNU6-757P-201ENST00000410334 100 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC068533.2-201ENST00000411872 306 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 MFSD13B-201ENST00000420133 1290 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 MTCO3P1-205ENST00000422088 832 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC234779.1-201ENST00000425910 285 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 USP9YP11-201ENST00000427537 717 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 USP9YP31-201ENST00000431405 881 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 CETN4P-201ENST00000432407 469 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 MTND1P32-201ENST00000433043 938 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 EXTL2P1-201ENST00000446218 416 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC053481.1-201ENST00000467217 306 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AP000893.1-201ENST00000474462 794 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 RN7SL812P-201ENST00000493791 279 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 OR5H4P-201ENST00000510851 923 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AP001189.2-201ENST00000527320 189 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC006064.5-201ENST00000541782 248 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AL109766.1-201ENST00000555080 552 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 MIR4504-201ENST00000577413 92 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 MIR4697-201ENST00000582977 78 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC008751.2-201ENST00000597885 980 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC008782.1-201ENST00000603386 430 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 TEX41-238ENST00000604253 709 ntTSL 5 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AL158042.1-201ENST00000605338 460 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC097478.2-201ENST00000610572 514 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-1Q99801 AL139418.1-201ENST00000613613 177 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC069209.1-201ENST00000619282 651 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 MIR6810-201ENST00000622701 70 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AL512506.2-201ENST00000624472 458 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 MIR4278-201ENST00000636094 69 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 AC068620.4-201ENST00000636730 1182 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 MKKS-204ENST00000639674 192 ntBASIC3.66□□□□□ -1.82
NKX3-1Q99801 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-1Q99801 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-1Q99801 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.66□□□□□ -1.82
NKX3-1Q99801 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
NKX3-1Q99801 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 124.8 ms