Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC3.05□□□□□ -1.92
FOXA1P55317 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
FOXA1P55317 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
FOXA1P55317 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
FOXA1P55317 AL139811.1-201ENST00000424779 2299 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
FOXA1P55317 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.04□□□□□ -1.92
FOXA1P55317 ZNF826P-207ENST00000622273 1910 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
FOXA1P55317 RNU6-304P-201ENST00000364855 107 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 SNORA70.4-201ENST00000365509 134 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 SNORA70E-201ENST00000384492 135 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 ZNF736P10Y-201ENST00000403990 1110 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 DHFRP5-201ENST00000406944 564 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 OR1AA1P-201ENST00000419597 916 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA1P55317 OR2AS1P-201ENST00000427827 319 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 RPL37P1-201ENST00000432310 284 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 XKRYP6-201ENST00000440468 1116 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 XKRYP3-201ENST00000442113 1116 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 VN1R48P-201ENST00000448149 1036 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 MTND6P6-201ENST00000478031 263 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC3.04□□□□□ -1.92
FOXA1P55317 SOD1P3-201ENST00000518682 454 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 SMARCE1P4-201ENST00000523647 241 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.04□□□□□ -1.92
FOXA1P55317 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA1P55317 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA1P55317 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA1P55317 AL845331.3-202ENST00000562856 261 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC3.04□□□□□ -1.92
FOXA1P55317 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC3.04□□□□□ -1.92
FOXA1P55317 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC3.04□□□□□ -1.92
FOXA1P55317 AC015849.2-201ENST00000605738 409 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.04□□□□□ -1.92
FOXA1P55317 AC019080.5-201ENST00000624891 757 ntBASIC3.04□□□□□ -1.92
FOXA1P55317 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.04□□□□□ -1.92
FOXA1P55317 AL161912.2-201ENST00000565707 3007 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA1P55317 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA1P55317 RNU6-819P-201ENST00000364116 107 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA1P55317 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA1P55317 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC3.03□□□□□ -1.92
FOXA1P55317 AL357075.1-201ENST00000404107 726 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 RNU2-65P-201ENST00000410162 185 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 AC069218.2-201ENST00000411665 344 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA1P55317 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA1P55317 AC108734.1-201ENST00000439549 399 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 UQCRHP3-201ENST00000451503 251 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA1P55317 RPL5P13-201ENST00000462840 709 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 RPL23AP62-201ENST00000463396 453 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 RPL21P10-201ENST00000463521 490 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 RPS4XP10-201ENST00000465034 731 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 RN7SL293P-201ENST00000481765 281 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 RPL23AP44-201ENST00000482216 473 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
FOXA1P55317 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.03□□□□□ -1.92
FOXA1P55317 UBE2NP1-201ENST00000545592 458 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA1P55317 PRELID3BP8-201ENST00000604148 295 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 AC105227.2-201ENST00000615075 605 ntBASIC3.03□□□□□ -1.92
FOXA1P55317 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC3.03□□□□□ -1.92
FOXA1P55317 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA1P55317 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.03□□□□□ -1.92
FOXA1P55317 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA1P55317 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA1P55317 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA1P55317 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
FOXA1P55317 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
FOXA1P55317 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.93
FOXA1P55317 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.03□□□□□ -1.93
FOXA1P55317 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
FOXA1P55317 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.02□□□□□ -1.93
FOXA1P55317 AL049781.1-201ENST00000623195 3585 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.02□□□□□ -1.93
FOXA1P55317 RPL23AP57-201ENST00000332361 466 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 MIR208A-201ENST00000362287 71 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 AC110754.1-201ENST00000399740 601 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.02□□□□□ -1.93
FOXA1P55317 MTCO3P31-201ENST00000405526 789 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 AL049610.1-201ENST00000423374 372 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 USP9YP31-201ENST00000431405 881 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA1P55317 AC005019.1-201ENST00000436455 431 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA1P55317 Z75741.1-201ENST00000446793 314 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.02□□□□□ -1.93
FOXA1P55317 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA1P55317 RN7SL20P-201ENST00000488827 297 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
FOXA1P55317 OR52A4P-203ENST00000498233 1014 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA1P55317 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
FOXA1P55317 AC006499.5-201ENST00000505037 514 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 AC034244.2-201ENST00000514668 858 ntBASIC3.02□□□□□ -1.93
FOXA1P55317 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms