Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
TM9SF3Q9HD45 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
TM9SF3Q9HD45 IPO8P1-201ENST00000455509 3109 ntBASIC3.83□□□□□ -1.8
TM9SF3Q9HD45 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
TM9SF3Q9HD45 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 RNU6-335P-201ENST00000364563 113 ntBASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 AL121972.1-201ENST00000402023 252 ntBASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 MTHFD2P2-201ENST00000407725 247 ntBASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 RPS29P4-201ENST00000414733 161 ntBASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 Z74696.2-201ENST00000436514 498 ntBASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 VN1R17P-201ENST00000472048 1090 ntBASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 AC104619.4-201ENST00000510773 249 ntBASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 AC022695.1-201ENST00000522089 237 ntBASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 MTCYBP41-201ENST00000528913 1123 ntBASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 MIR4504-201ENST00000577413 92 ntBASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 AC125494.3-201ENST00000602759 455 ntBASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 AC015967.1-201ENST00000619893 476 ntBASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
TM9SF3Q9HD45 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 NCAPGP1-201ENST00000505112 1814 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 RNA5SP295-201ENST00000362655 121 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 RNU2-71P-201ENST00000411395 189 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 IFNNP1-201ENST00000429219 553 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 MTND4LP14-201ENST00000429447 288 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AC009263.1-201ENST00000441193 1239 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 XKRY2-201ENST00000442362 1093 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AC068135.1-201ENST00000446164 246 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 RPL23AP15-201ENST00000450202 459 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 MRPL35P4-201ENST00000453682 566 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 RN7SL93P-201ENST00000463035 293 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AC093663.2-201ENST00000484625 313 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 BTF3L4P4-201ENST00000506381 449 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AC005798.1-201ENST00000513715 387 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 CIR1P1-201ENST00000524055 1133 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 MIR5187-201ENST00000583479 76 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AC011468.4-201ENST00000603942 409 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AC025016.1-201ENST00000616746 682 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 STMN1P1-201ENST00000617809 440 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AC083865.1-201ENST00000636634 831 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 AC007256.1-201ENST00000392253 2765 ntBASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
TM9SF3Q9HD45 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AC138915.3-201ENST00000562908 1389 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 RNU6-1243P-201ENST00000364028 107 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 MIR34B-201ENST00000385076 84 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AL138880.1-201ENST00000405824 642 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AP000567.1-201ENST00000406413 156 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 UBE2V1P11-201ENST00000411559 285 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AL513175.1-201ENST00000431492 780 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 VDAC1P3-201ENST00000434069 851 ntBASIC3.8□□□□□ -1.8
TM9SF3Q9HD45 HSPD1P21-201ENST00000436541 245 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms