Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 Xist_exon1.1-201ENST00000618930 85 ntBASIC2.93□□□□□ -1.94
CHD3Q12873 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.93□□□□□ -1.94
CHD3Q12873 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC2.93□□□□□ -1.94
CHD3Q12873 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CHD3Q12873 AC005183.1-201ENST00000603687 1979 ntBASIC2.93□□□□□ -1.94
CHD3Q12873 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CHD3Q12873 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CHD3Q12873 AL645937.1-201ENST00000641739 1652 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 AC011155.1-201ENST00000316512 456 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
CHD3Q12873 MIR30E-201ENST00000362104 92 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 MIR184-201ENST00000384962 84 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 AL357075.1-201ENST00000404107 726 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.92□□□□□ -1.94
CHD3Q12873 RNU6-55P-201ENST00000411092 107 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 RNU6-954P-201ENST00000411355 107 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC2.92□□□□□ -1.94
CHD3Q12873 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.92□□□□□ -1.94
CHD3Q12873 KC877373.1-201ENST00000479066 408 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC2.92□□□□□ -1.94
CHD3Q12873 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC2.92□□□□□ -1.94
CHD3Q12873 MIR4276-201ENST00000584832 70 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 AC107294.1-201ENST00000609524 467 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 RMST_8.1-201ENST00000610287 165 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 AL158062.1-201ENST00000619632 745 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 AC090337.1-201ENST00000579651 2074 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 MAPK10-373ENST00000641983 6772 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 NR1H5P-201ENST00000452683 1377 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CHD3Q12873 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
CHD3Q12873 AP001148.1-201ENST00000624124 2359 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC2.92□□□□□ -1.94
CHD3Q12873 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.92□□□□□ -1.94
CHD3Q12873 AL136131.1-201ENST00000406079 803 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC2.92□□□□□ -1.94
CHD3Q12873 RPS15AP6-201ENST00000420703 385 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC2.92□□□□□ -1.94
CHD3Q12873 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.92□□□□□ -1.94
CHD3Q12873 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC2.92□□□□□ -1.94
CHD3Q12873 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC2.92□□□□□ -1.94
CHD3Q12873 CYCSP20-201ENST00000473154 315 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 RPL23AP73-201ENST00000492507 471 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC2.92□□□□□ -1.94
CHD3Q12873 HIGD1AP3-201ENST00000515857 278 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 TBCA-206ENST00000518338 551 ntTSL 2 BASIC2.92□□□□□ -1.94
CHD3Q12873 UBE2NP1-201ENST00000545592 458 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC2.92□□□□□ -1.94
CHD3Q12873 AC106785.3-201ENST00000564064 847 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 MIR5047-201ENST00000579212 100 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 LARP7P3-201ENST00000579888 337 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.92□□□□□ -1.94
CHD3Q12873 AL365503.1-201ENST00000605247 905 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 AC105227.2-201ENST00000615075 605 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 AL732618.1-201ENST00000623251 301 ntBASIC2.92□□□□□ -1.94
CHD3Q12873 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.92□□□□□ -1.94
CHD3Q12873 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC2.91□□□□□ -1.94
CHD3Q12873 AC119744.1-201ENST00000454746 1715 ntBASIC2.91□□□□□ -1.94
CHD3Q12873 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CHD3Q12873 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC2.91□□□□□ -1.94
CHD3Q12873 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CHD3Q12873 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
CHD3Q12873 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CHD3Q12873 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
CHD3Q12873 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CHD3Q12873 RNA5SP31-201ENST00000411144 127 ntBASIC2.91□□□□□ -1.94
CHD3Q12873 AL024507.1-201ENST00000412741 274 ntBASIC2.91□□□□□ -1.94
CHD3Q12873 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC2.91□□□□□ -1.94
CHD3Q12873 BX842559.1-201ENST00000419615 532 ntBASIC2.91□□□□□ -1.94
CHD3Q12873 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC2.91□□□□□ -1.94
CHD3Q12873 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC2.91□□□□□ -1.94
CHD3Q12873 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC2.91□□□□□ -1.94
CHD3Q12873 AC022431.1-201ENST00000450941 438 ntBASIC2.91□□□□□ -1.94
CHD3Q12873 RBMY2UP-201ENST00000453474 324 ntBASIC2.91□□□□□ -1.94
CHD3Q12873 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC2.91□□□□□ -1.94
CHD3Q12873 IL7R-208ENST00000511982 612 ntTSL 2 BASIC2.91□□□□□ -1.94
CHD3Q12873 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.91□□□□□ -1.94
CHD3Q12873 RFPL4AP3-201ENST00000515267 345 ntBASIC2.91□□□□□ -1.94
CHD3Q12873 AC026801.2-201ENST00000515352 425 ntBASIC2.91□□□□□ -1.94
CHD3Q12873 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.91□□□□□ -1.94
CHD3Q12873 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC2.91□□□□□ -1.94
CHD3Q12873 C2orf27A-204ENST00000623058 969 ntBASIC2.91□□□□□ -1.94
CHD3Q12873 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC2.91□□□□□ -1.94
CHD3Q12873 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC2.91□□□□□ -1.94
CHD3Q12873 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CHD3Q12873 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC2.91□□□□□ -1.94
CHD3Q12873 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC2.91□□□□□ -1.94
CHD3Q12873 AC024341.1-201ENST00000526444 1552 ntBASIC2.91□□□□□ -1.94
CHD3Q12873 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.94
CHD3Q12873 AC068647.1-201ENST00000489539 2265 ntBASIC2.9□□□□□ -1.94
CHD3Q12873 CEP170P1-201ENST00000502249 4587 ntBASIC2.9□□□□□ -1.94
CHD3Q12873 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
CHD3Q12873 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.94
CHD3Q12873 RNU1-70P-201ENST00000362618 164 ntBASIC2.9□□□□□ -1.94
CHD3Q12873 RPL5P19-201ENST00000404228 893 ntBASIC2.9□□□□□ -1.94
CHD3Q12873 HMGN1P24-201ENST00000412282 298 ntBASIC2.9□□□□□ -1.94
CHD3Q12873 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC2.9□□□□□ -1.94
CHD3Q12873 RPS7P13-201ENST00000413955 498 ntBASIC2.9□□□□□ -1.94
CHD3Q12873 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.9□□□□□ -1.94
CHD3Q12873 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.9□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms