Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC3.08□□□□□ -1.92
FOXA1P55317 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
FOXA1P55317 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
FOXA1P55317 AC090229.1-201ENST00000590983 1609 ntBASIC3.08□□□□□ -1.92
FOXA1P55317 AC093831.2-201ENST00000624393 3427 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
FOXA1P55317 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
FOXA1P55317 SNORA46-201ENST00000384762 135 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
FOXA1P55317 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
FOXA1P55317 AC006946.1-201ENST00000429106 328 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.07□□□□□ -1.92
FOXA1P55317 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.07□□□□□ -1.92
FOXA1P55317 TPTE2P1-204ENST00000435256 593 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 CACYBPP1-201ENST00000438592 684 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC3.07□□□□□ -1.92
FOXA1P55317 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
FOXA1P55317 snoU13.22-201ENST00000459428 104 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 RPL7P15-201ENST00000461190 712 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 AC091564.1-201ENST00000464563 479 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.07□□□□□ -1.92
FOXA1P55317 MTND3P6-201ENST00000485242 339 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 AP001086.1-201ENST00000494882 321 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC3.07□□□□□ -1.92
FOXA1P55317 AC067904.2-201ENST00000517322 1283 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC3.07□□□□□ -1.92
FOXA1P55317 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.07□□□□□ -1.92
FOXA1P55317 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC3.07□□□□□ -1.92
FOXA1P55317 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.07□□□□□ -1.92
FOXA1P55317 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.07□□□□□ -1.92
FOXA1P55317 AC024220.1-201ENST00000603675 484 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 HMGB1P51-201ENST00000605166 638 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 AC116447.1-201ENST00000613153 453 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 AL354976.1-201ENST00000613843 387 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 AL355365.1-201ENST00000616480 294 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 AC145207.9-201ENST00000623802 325 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
FOXA1P55317 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
FOXA1P55317 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.07□□□□□ -1.92
FOXA1P55317 Z83843.1-201ENST00000604070 3685 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.07□□□□□ -1.92
FOXA1P55317 AC092079.1-201ENST00000558620 1985 ntBASIC3.07□□□□□ -1.92
FOXA1P55317 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.07□□□□□ -1.92
FOXA1P55317 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.06□□□□□ -1.92
FOXA1P55317 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
FOXA1P55317 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.06□□□□□ -1.92
FOXA1P55317 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
FOXA1P55317 SNORA71.3-201ENST00000362582 128 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 RNA5SP50-201ENST00000363731 107 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
FOXA1P55317 RNU6-225P-201ENST00000384613 103 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 AC240504.1-201ENST00000395709 845 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.06□□□□□ -1.92
FOXA1P55317 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC3.06□□□□□ -1.92
FOXA1P55317 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.06□□□□□ -1.92
FOXA1P55317 ARF4P2-201ENST00000430209 526 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 MTCYBP29-201ENST00000436327 1006 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 AC092013.1-201ENST00000438795 332 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 ELOCP10-201ENST00000440624 327 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 RAD1P2-201ENST00000446414 663 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.06□□□□□ -1.92
FOXA1P55317 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
FOXA1P55317 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.06□□□□□ -1.92
FOXA1P55317 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.06□□□□□ -1.92
FOXA1P55317 ELOCP34-201ENST00000604436 327 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 AC073657.2-201ENST00000605661 303 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC3.06□□□□□ -1.92
FOXA1P55317 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.06□□□□□ -1.92
FOXA1P55317 AL356490.1-201ENST00000623079 479 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 AC007342.9-201ENST00000623877 1385 ntBASIC3.06□□□□□ -1.92
FOXA1P55317 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.06□□□□□ -1.92
FOXA1P55317 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
FOXA1P55317 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
FOXA1P55317 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
FOXA1P55317 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
FOXA1P55317 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
FOXA1P55317 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
FOXA1P55317 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
FOXA1P55317 RNU1-33P-201ENST00000364249 162 ntBASIC3.05□□□□□ -1.92
FOXA1P55317 MIR200C-201ENST00000384980 68 ntBASIC3.05□□□□□ -1.92
FOXA1P55317 MIR23A-201ENST00000385245 73 ntBASIC3.05□□□□□ -1.92
FOXA1P55317 RNU6-603P-201ENST00000411403 107 ntBASIC3.05□□□□□ -1.92
FOXA1P55317 AC245054.2-201ENST00000415639 319 ntBASIC3.05□□□□□ -1.92
FOXA1P55317 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.05□□□□□ -1.92
FOXA1P55317 UBE2V2P3-201ENST00000433562 437 ntBASIC3.05□□□□□ -1.92
FOXA1P55317 ARL5AP3-201ENST00000439327 386 ntBASIC3.05□□□□□ -1.92
FOXA1P55317 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
FOXA1P55317 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.05□□□□□ -1.92
FOXA1P55317 PANCR-201ENST00000503456 493 ntTSL 5 BASIC3.05□□□□□ -1.92
FOXA1P55317 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.05□□□□□ -1.92
FOXA1P55317 C1GALT1P1-201ENST00000548895 1089 ntBASIC3.05□□□□□ -1.92
FOXA1P55317 AC068714.1-201ENST00000559623 800 ntBASIC3.05□□□□□ -1.92
FOXA1P55317 AC009268.1-201ENST00000561352 1203 ntBASIC3.05□□□□□ -1.92
FOXA1P55317 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA1P55317 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC3.05□□□□□ -1.92
FOXA1P55317 MTCO2P22-201ENST00000603246 681 ntBASIC3.05□□□□□ -1.92
FOXA1P55317 AL049844.2-201ENST00000604280 628 ntBASIC3.05□□□□□ -1.92
FOXA1P55317 BNIP3P7-201ENST00000605641 516 ntBASIC3.05□□□□□ -1.92
FOXA1P55317 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms