Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AC121761.2-201ENST00000617300 689 ntBASIC3.18□□□□□ -1.9
VPS29Q9UBQ0 XIST_intron.1-201ENST00000619444 68 ntBASIC3.18□□□□□ -1.9
VPS29Q9UBQ0 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VPS29Q9UBQ0 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VPS29Q9UBQ0 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VPS29Q9UBQ0 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS29Q9UBQ0 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 SNORA73.2-201ENST00000364946 201 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AIMP1P1-201ENST00000418670 937 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AC245291.1-201ENST00000419501 328 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 RPL21P110-201ENST00000433345 446 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AC105402.2-201ENST00000438503 358 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 RPL26P28-201ENST00000451325 435 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AC010468.1-201ENST00000461022 817 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AC005921.1-201ENST00000510589 286 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 SNORA64.4-201ENST00000516632 81 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AC023632.4-201ENST00000517783 191 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 IGKV2D-19-201ENST00000523346 262 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 OR8I1P-201ENST00000529291 931 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 MIR5186-201ENST00000577504 120 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 ZNF33CP-201ENST00000432492 2030 ntBASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS29Q9UBQ0 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 RNA5SP383-201ENST00000362934 120 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 RNU6-618P-201ENST00000363518 112 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 RNU6-244P-201ENST00000391028 104 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 HSPE1P26-201ENST00000405341 275 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC122718.1-201ENST00000439448 744 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 ATP5C1P1-201ENST00000441945 895 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC078918.1-201ENST00000498515 228 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC108078.3-201ENST00000502633 489 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC110792.2-201ENST00000510278 224 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 SEC11B-201ENST00000518383 499 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC025260.1-201ENST00000548858 430 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 MIR3922-201ENST00000585192 84 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AC069304.3-201ENST00000603938 1084 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 AL359715.4-201ENST00000606629 1436 ntBASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS29Q9UBQ0 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.15□□□□□ -1.9
VPS29Q9UBQ0 ZNF826P-207ENST00000622273 1910 ntBASIC3.15□□□□□ -1.9
VPS29Q9UBQ0 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
VPS29Q9UBQ0 AL592494.2-201ENST00000425455 1548 ntBASIC3.15□□□□□ -1.9
VPS29Q9UBQ0 RNU1-70P-201ENST00000362618 164 ntBASIC3.15□□□□□ -1.91
VPS29Q9UBQ0 AC234772.1-201ENST00000377927 937 ntBASIC3.15□□□□□ -1.91
VPS29Q9UBQ0 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.15□□□□□ -1.91
VPS29Q9UBQ0 BX890604.2-201ENST00000427883 474 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms