Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.79□□□□□ -1.8
SOX3P41225 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC3.79□□□□□ -1.8
SOX3P41225 AL117339.2-201ENST00000430475 180 ntBASIC3.79□□□□□ -1.8
SOX3P41225 MOB1AP1-201ENST00000430903 535 ntBASIC3.79□□□□□ -1.8
SOX3P41225 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.79□□□□□ -1.8
SOX3P41225 GTF2IP7-202ENST00000436677 309 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.79□□□□□ -1.8
SOX3P41225 AF228730.2-201ENST00000438784 848 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC3.79□□□□□ -1.8
SOX3P41225 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.79□□□□□ -1.8
SOX3P41225 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.79□□□□□ -1.8
SOX3P41225 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.79□□□□□ -1.8
SOX3P41225 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC3.79□□□□□ -1.8
SOX3P41225 AL162151.2-201ENST00000448875 158 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AC233982.1-201ENST00000451247 436 ntBASIC3.79□□□□□ -1.8
SOX3P41225 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AC096992.1-201ENST00000459808 709 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AC005410.1-202ENST00000460347 485 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AC126121.1-201ENST00000482313 553 ntBASIC3.79□□□□□ -1.8
SOX3P41225 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SOX3P41225 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SOX3P41225 AC109458.1-201ENST00000508858 316 ntBASIC3.79□□□□□ -1.8
SOX3P41225 Y_RNA.717-201ENST00000517106 92 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.79□□□□□ -1.8
SOX3P41225 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.79□□□□□ -1.8
SOX3P41225 SMARCE1P4-201ENST00000523647 241 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SOX3P41225 OR4C2P-201ENST00000530855 1064 ntBASIC3.79□□□□□ -1.8
SOX3P41225 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.79□□□□□ -1.8
SOX3P41225 MIR3912-201ENST00000577566 105 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.79□□□□□ -1.8
SOX3P41225 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.79□□□□□ -1.8
SOX3P41225 HMGB1P50-201ENST00000605814 607 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AC024941.1-201ENST00000612250 334 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AC140725.3-201ENST00000616193 880 ntBASIC3.79□□□□□ -1.8
SOX3P41225 AL356863.1-201ENST00000623378 1080 ntBASIC3.79□□□□□ -1.8
SOX3P41225 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.79□□□□□ -1.8
SOX3P41225 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.79□□□□□ -1.8
SOX3P41225 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.79□□□□□ -1.8
SOX3P41225 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SOX3P41225 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
SOX3P41225 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
SOX3P41225 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SOX3P41225 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SOX3P41225 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.78□□□□□ -1.8
SOX3P41225 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SOX3P41225 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.78□□□□□ -1.8
SOX3P41225 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
SOX3P41225 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SOX3P41225 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.78□□□□□ -1.8
SOX3P41225 ASNSP1-201ENST00000518311 1939 ntBASIC3.78□□□□□ -1.8
SOX3P41225 FAM35DP-201ENST00000323387 2712 ntBASIC3.78□□□□□ -1.8
SOX3P41225 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SOX3P41225 RNU4-28P-201ENST00000364739 141 ntBASIC3.78□□□□□ -1.8
SOX3P41225 RNU1-89P-201ENST00000384592 164 ntBASIC3.78□□□□□ -1.8
SOX3P41225 RNU6-636P-201ENST00000384598 107 ntBASIC3.78□□□□□ -1.8
SOX3P41225 MIR513B-201ENST00000385136 84 ntBASIC3.78□□□□□ -1.8
SOX3P41225 RNU6-1242P-201ENST00000391052 103 ntBASIC3.78□□□□□ -1.8
SOX3P41225 SNORA57.1-201ENST00000391227 145 ntBASIC3.78□□□□□ -1.8
SOX3P41225 HSPE1P12-201ENST00000412576 301 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.78□□□□□ -1.8
SOX3P41225 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC3.78□□□□□ -1.8
SOX3P41225 XKRYP1-201ENST00000423438 492 ntBASIC3.78□□□□□ -1.8
SOX3P41225 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AL031736.2-201ENST00000426573 787 ntBASIC3.78□□□□□ -1.8
SOX3P41225 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.78□□□□□ -1.8
SOX3P41225 XKRYP2-201ENST00000432915 492 ntBASIC3.78□□□□□ -1.8
SOX3P41225 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX3P41225 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.78□□□□□ -1.8
SOX3P41225 RAB11AP1-201ENST00000442978 646 ntBASIC3.78□□□□□ -1.8
SOX3P41225 RPS4XP4-201ENST00000443195 763 ntBASIC3.78□□□□□ -1.8
SOX3P41225 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.78□□□□□ -1.8
SOX3P41225 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.78□□□□□ -1.8
SOX3P41225 AC004022.1-201ENST00000447766 1066 ntBASIC3.78□□□□□ -1.8
SOX3P41225 RPL5P32-201ENST00000454085 879 ntBASIC3.78□□□□□ -1.8
SOX3P41225 RAD23BP3-201ENST00000454157 1152 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.78□□□□□ -1.8
SOX3P41225 RPL36AP13-201ENST00000457490 317 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.78□□□□□ -1.8
SOX3P41225 RPL7P1-201ENST00000468161 747 ntBASIC3.78□□□□□ -1.8
SOX3P41225 RPL7P9-201ENST00000468715 747 ntBASIC3.78□□□□□ -1.8
SOX3P41225 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX3P41225 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
SOX3P41225 AC011037.1-201ENST00000483964 558 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX3P41225 AC069499.1-201ENST00000489433 509 ntBASIC3.78□□□□□ -1.8
SOX3P41225 RPL30P11-201ENST00000495304 339 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX3P41225 AC084024.2-201ENST00000503480 791 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SOX3P41225 AC026402.1-201ENST00000513642 170 ntBASIC3.78□□□□□ -1.8
SOX3P41225 RN7SKP287-201ENST00000516546 266 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX3P41225 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.78□□□□□ -1.8
SOX3P41225 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.78□□□□□ -1.8
SOX3P41225 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.78□□□□□ -1.8
SOX3P41225 OR8R1P-201ENST00000543943 764 ntBASIC3.78□□□□□ -1.8
SOX3P41225 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3.78□□□□□ -1.8
SOX3P41225 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.78□□□□□ -1.8
SOX3P41225 OR4U1P-201ENST00000554958 912 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms