Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.91□□□□□ -1.62
MSX2P35548 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.91□□□□□ -1.62
MSX2P35548 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC4.91□□□□□ -1.62
MSX2P35548 BNIP3P23-201ENST00000599655 511 ntBASIC4.91□□□□□ -1.62
MSX2P35548 AC018695.5-201ENST00000605872 315 ntBASIC4.91□□□□□ -1.62
MSX2P35548 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.91□□□□□ -1.62
MSX2P35548 AC097468.3-201ENST00000607956 456 ntBASIC4.91□□□□□ -1.62
MSX2P35548 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.91□□□□□ -1.62
MSX2P35548 AC019193.2-201ENST00000610012 634 ntBASIC4.91□□□□□ -1.62
MSX2P35548 OR2L1P-202ENST00000641567 1023 ntBASIC4.91□□□□□ -1.62
MSX2P35548 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
MSX2P35548 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
MSX2P35548 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.91□□□□□ -1.62
MSX2P35548 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
MSX2P35548 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
MSX2P35548 AC119744.1-201ENST00000454746 1715 ntBASIC4.91□□□□□ -1.62
MSX2P35548 ZNF652P1-201ENST00000442420 1309 ntBASIC4.91□□□□□ -1.62
MSX2P35548 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
MSX2P35548 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC4.91□□□□□ -1.62
MSX2P35548 FARSBP1-201ENST00000435808 1778 ntBASIC4.91□□□□□ -1.62
MSX2P35548 AC090017.1-201ENST00000548612 1779 ntBASIC4.91□□□□□ -1.62
MSX2P35548 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.91□□□□□ -1.62
MSX2P35548 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
MSX2P35548 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
MSX2P35548 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.9□□□□□ -1.62
MSX2P35548 AC006026.1-201ENST00000444025 1803 ntBASIC4.9□□□□□ -1.62
MSX2P35548 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.9□□□□□ -1.62
MSX2P35548 AC006378.2-201ENST00000623178 2476 ntBASIC4.9□□□□□ -1.62
MSX2P35548 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.9□□□□□ -1.62
MSX2P35548 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
MSX2P35548 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
MSX2P35548 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
MSX2P35548 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.9□□□□□ -1.62
MSX2P35548 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
MSX2P35548 OR4A15-201ENST00000314706 1035 ntBASIC4.9□□□□□ -1.63
MSX2P35548 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
MSX2P35548 RNA5SP510-201ENST00000364697 99 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
MSX2P35548 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
MSX2P35548 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.9□□□□□ -1.63
MSX2P35548 RNU6-1103P-201ENST00000384150 107 ntBASIC4.9□□□□□ -1.63
MSX2P35548 SNORA51.12-201ENST00000384448 134 ntBASIC4.9□□□□□ -1.63
MSX2P35548 RNU6-809P-201ENST00000384461 107 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AL356776.1-201ENST00000406574 447 ntBASIC4.9□□□□□ -1.63
MSX2P35548 GAPDHP42-201ENST00000406848 981 ntBASIC4.9□□□□□ -1.63
MSX2P35548 Y_RNA.608-201ENST00000410647 95 ntBASIC4.9□□□□□ -1.63
MSX2P35548 RPS3AP9-201ENST00000417027 792 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC4.9□□□□□ -1.63
MSX2P35548 AC004690.1-201ENST00000418216 328 ntBASIC4.9□□□□□ -1.63
MSX2P35548 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSX2P35548 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX2P35548 EIF4A1P7-201ENST00000421800 1220 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX2P35548 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX2P35548 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX2P35548 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX2P35548 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSX2P35548 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX2P35548 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC4.9□□□□□ -1.63
MSX2P35548 AC104850.1-201ENST00000435940 476 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AC002504.1-201ENST00000438281 691 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.9□□□□□ -1.63
MSX2P35548 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC4.9□□□□□ -1.63
MSX2P35548 EEF1B2P6-201ENST00000445713 673 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AC079448.1-201ENST00000449377 373 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSX2P35548 FABP3P2-201ENST00000453169 399 ntBASIC4.9□□□□□ -1.63
MSX2P35548 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSX2P35548 RPL23AP71-201ENST00000470966 469 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AC018710.1-201ENST00000506509 158 ntBASIC4.9□□□□□ -1.63
MSX2P35548 OR5M14P-201ENST00000506803 618 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AC114786.4-201ENST00000508771 728 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.9□□□□□ -1.63
MSX2P35548 AC093809.1-201ENST00000509155 340 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX2P35548 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX2P35548 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4.9□□□□□ -1.63
MSX2P35548 RNA5SP228-201ENST00000516232 133 ntBASIC4.9□□□□□ -1.63
MSX2P35548 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
MSX2P35548 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX2P35548 AC005868.1-201ENST00000536421 331 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.9□□□□□ -1.63
MSX2P35548 RPL21P5-201ENST00000554662 472 ntBASIC4.9□□□□□ -1.63
MSX2P35548 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.9□□□□□ -1.63
MSX2P35548 AC008521.2-201ENST00000591021 259 ntBASIC4.9□□□□□ -1.63
MSX2P35548 HCG18-243ENST00000602498 327 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX2P35548 AC008814.1-201ENST00000603797 406 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AC007363.1-201ENST00000604736 620 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AL009028.1-201ENST00000604895 802 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AL355816.1-201ENST00000607951 118 ntBASIC4.9□□□□□ -1.63
MSX2P35548 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.9□□□□□ -1.63
MSX2P35548 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
MSX2P35548 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
MSX2P35548 AL445264.1-201ENST00000621719 171 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AC132068.1-201ENST00000623805 459 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AC006065.6-201ENST00000625201 545 ntBASIC4.9□□□□□ -1.63
MSX2P35548 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
MSX2P35548 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC4.9□□□□□ -1.63
MSX2P35548 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.9□□□□□ -1.63
MSX2P35548 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms